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Protocols

LigandScout specifications

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Unique identifier OMICS_33299
Name LigandScout

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This tool is not maintained anymore.

Publication for LigandScout

LigandScout citations

 (70)
library_books

How Diverse Are the Protein Bound Conformations of Small Molecule Drugs and Cofactors?

2018
PMCID: 5880911
PMID: 29637066
DOI: 10.3389/fchem.2018.00068

[…] aestro (Schrödinger Release 2016-2: Maestro, Schrödinger, LLC, New York, NY, 2016), MOE (Molecular Operating Environment (MOE), version 2016.08; Chemical Computing Group Inc.: Montreal, QC, 2016) and LigandScout (LigandScout, version 4.2; Inte:Ligand GmbH: Vienna, Austria, 2017; Wolber and Langer, ), respectively.For the sake of clarity, all hydrogens, only polar hydrogens or no hydrogens were inc […]

library_books

Computer Aided Drug Design in Epigenetics

2018
PMCID: 5857607
PMID: 29594101
DOI: 10.3389/fchem.2018.00057

[…] r compound collection, the ChemBridge database containing 328,000 molecules (Heinke et al., ). Based on previously reported binding modes of allantodapsone, the pharmacophore models were generated in LigandScout with one HBD, one hydrogen bond acceptor (HBA), two hydrophobic/aromatic features, one included volume and 23 excluded volumes leading to the identification of nine compounds with PRMT1 in […]

library_books

Pharmacophore Modeling and in Silico/in Vitro Screening for Human Cytochrome P450 11B1 and Cytochrome P450 11B2 Inhibitors

2017
PMCID: 5742115
PMID: 29312923
DOI: 10.3389/fchem.2017.00104

[…] After removing duplicates, 15948 decoys remained in the database. The 2D structures of all active compounds were constructed in ChemBioDraw Ultra 14.0 (Cambridgesoft, ). For conformational analysis, LigandScout 3.12 (Wolber and Langer, ) generated up to 500 conformers for each compound in the dataset with OMEGA-BEST (Hawkins et al., ; Hawkins and Nicholls, ) settings. […]

library_books

An Integrated Computational Approach for Plant Based Protein Tyrosine Phosphatase Non Receptor Type 1 Inhibitors

2017
Curr Comput Aided Drug Des
PMCID: 5744427
PMID: 28382867
DOI: 10.2174/1573409913666170406145607

[…] Eleven compounds were used as a training set based on their physiochemical properties, Lipinski’s filter, and IC50 values less than 10μM. These 11 compounds were used for pharmacophore modeling using LigandScout 4.1 []. ChemDraw Ultra 8.0 software [] is used for sketching chemical structure of training dataset and saved in Protein Data Bank (PDB) format. Consequently, these files were used as inpu […]

call_split

Pyridoxine dipharmacophore derivatives as potent glucokinase activators for the treatment of type 2 diabetes mellitus

2017
Sci Rep
PMCID: 5700121
PMID: 29167582
DOI: 10.1038/s41598-017-16405-2
call_split See protocol

[…] s data, using the PyRx 0.8 program https://sourceforge.net/projects/pyrx/, where the docking space covering the allosteric GK site was built. Analysis of the binding mechanism was performed using the LigandScout 4.1 program (Ligand GmbH. http://www.inteligand.com/ligandscout/). […]

library_books

Targeting Dengue Virus NS 3 Helicase by Ligand based Pharmacophore Modeling and Structure based Virtual Screening

2017
PMCID: 5671650
PMID: 29164104
DOI: 10.3389/fchem.2017.00088

[…] All the computation experiments were performed on Windows 8 workstation. LigandScout version 3.12 (Wolber and Langer, ) was used for pharmacophore modeling. The X-ray crystallography structure of DENV-2 NS-3 helicase [PDB ID: 2BMF (Xu et al., )] was retrieved from RCSB Pro […]


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LigandScout institution(s)
Inte:Ligand GmbH, Vienna, Austria; Computer Aided Molecular Design Group, Department of Pharmaceutical Chemistry, Institute of Pharmacy, University of Innsbruck, Innsbruck, Austria

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