LigSearch specifications


Unique identifier OMICS_13838
Name LigSearch
Interface Web user interface
Restrictions to use None
Input data A UniProt ID or a pasted protein sequence, a PDB code or an uploaded PDB file protein structure
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes


Publication for LigSearch

LigSearch in publication

PMCID: 4089483
PMID: 25004962
DOI: 10.1107/S1399004714008578

[…] of the database constituents could be obtained from analysing the protein sequence and structure and extracting a data set of ligands that bind to similar proteins or binding sites. the ligsearch method (de beer et al., 2013) is of interest in this regard., the methodology for ligand identification introduced here has great potential as an important step towards possible automated […]

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LigSearch institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL–EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Center for Structural Genomics of Infectious Diseases, Northwestern University Feinberg School of Medicine, Chicago, IL, USA; Biological and Medicinal Chemistry Group, Wolfson Institute for Biomedical Research, University College London, London, UK
LigSearch funding source(s)
This work was supported by National Institutes of Health (grant GM094585), by the US Department of Energy, Office of Biological and Environmental Research (contract DE-AC02-06CH11357) (Midwest Center for Structural Genomics) and by Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services (Contract Nos. HHSN272200700058C and HHSN272201200026C).

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