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Number of citations per year for the bioinformatics software tool LIMSA

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LIMSA specifications


Unique identifier OMICS_02512
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for LIMSA

LIMSA citations


Lipidomics unveils the complexity of the lipidome in metabolic diseases

PMCID: 5786598
PMID: 29374337
DOI: 10.1186/s40169-018-0182-9

[…] jects/lipidblast) [, ]. Freely available software which combines one or more of the above steps includes the Analysis of Lipid Experiments (ALEX), Lipostar, MS-DIAL, and lipid mass spectrum analysis (LIMSA) platforms [–]. Numerous commercially available and instrument vendor-specific software packages have also been developed to streamline lipidomics data analysis. […]


Elovl4 5 bp deletion does not accelerate cone photoreceptor degeneration in an all cone mouse

PLoS One
PMCID: 5749830
PMID: 29293603
DOI: 10.1371/journal.pone.0190514

[…] g neutral loss scanning of m/z 141, and PS lipids were measured using neutral loss scanning of m/z 185. Quantification of lipid molecular species was performed using the Lipid Mass Spectrum Analysis (LIMSA, University of Helsinki) software’s peak model fit algorithm. Data is represented as the relative percent of each measured species within each class (PC, PE, PS) ± standard deviation. n = 4 for […]


2,3,7,8 Tetrachlorodibenzo p dioxin (TCDD) elicited effects on bile acid homeostasis: Alterations in biosynthesis, enterohepatic circulation, and microbial metabolism

Sci Rep
PMCID: 5517430
PMID: 28725001
DOI: 10.1038/s41598-017-05656-8

[…] determined empirically to ensure a linear range of detector response. Chromatographic peak alignment, feature detection, quantitation and bile acid identification were performed using MAVEN and SECD-LIMSA software. All bile acids were identified by comparison of retention time and accurate mass data against reference standards. Relative quantitation was performed against the deuterated GCDCA inte […]


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] rket: Kazusa Omics Data Market; kpath: Khaos Metabolic Pathways; LC: liquid chromatography; LDA: latent Dirichlet allocation; LDA: lipid data analyzer; LIMS: Laboratory Information Management System; LIMSA: Lipid Mass Spectrum Analysis; LOBSTAHS: Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences; m/z: mass-to-charge ratio; MaConDa: Mass Spectrometry Contaminant Database; MA […]


Regional changes in CNS and retinal glycerophospholipid profiles with age: a molecular blueprint[S]

J Lipid Res
PMCID: 5392743
PMID: 28202633
DOI: 10.1194/jlr.M070714

[…] ted for each group are represented as a relative percentage of the sum based on their response values. Abundances of lipid molecular species were calculated by using the Lipid Mass Spectrum Analysis (LIMSA) software (University of Helsinki, Helsinki, Finland). LIMSA was developed at the University of Helsinki for quantitative analysis of mass spectra of complex lipid samples. LIMSA can do peak fin […]


Membrane lipidomics in schizophrenia patients: a correlational study with clinical and cognitive manifestations

PMCID: 5315538
PMID: 27701405
DOI: 10.1038/tp.2016.142

[…] was used to measure the distribution of DPE and LPE between the two RBC membrane leaflets. The complete lipid data were acquired using Analyst 4.2.2 software. To identify and quantify spectral peaks, LIMSA software was used. […]

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LIMSA institution(s)
Institute of Biomedicine, Department of Biochemistry, University of Helsinki, Helsinki, Finland

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