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LIMSA specifications


Unique identifier OMICS_02512
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for LIMSA

LIMSA in publications

PMCID: 5786598
PMID: 29374337
DOI: 10.1186/s40169-018-0182-9

[…] [, ]. freely available software which combines one or more of the above steps includes the analysis of lipid experiments (alex), lipostar, ms-dial, and lipid mass spectrum analysis (limsa) platforms [–]. numerous commercially available and instrument vendor-specific software packages have also been developed to streamline lipidomics data analysis., an important application […]

PMCID: 5749830
PMID: 29293603
DOI: 10.1371/journal.pone.0190514

[…] neutral loss scanning of m/z 141, and ps lipids were measured using neutral loss scanning of m/z 185. quantification of lipid molecular species was performed using the lipid mass spectrum analysis (limsa, university of helsinki) software’s peak model fit algorithm. data is represented as the relative percent of each measured species within each class (pc, pe, ps) ± standard deviation. n = 4 […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] summarize these here. analysis of lipid experiments (alex) [], multiple reaction monitoring–based differential analysis (mrm-diff) [], licre [], lipidxplorer [], lipid mass spectrum analysis (limsa) [], visualization and phospholipid identification (valid) [], lipid and oxylipin biomarker screening through adduct hierarchy sequences (lobstahs) [], lipid-pro [], lipid data analyzer (lda) […]

PMCID: 5049929
PMID: 27531575
DOI: 10.1016/j.ebiom.2016.08.013

[…] chain compositions of selected sphingolipid ions using the ft analyzer operating at 100,000 mass resolving power. lipid identifications were achieved using the lipid mass spectrum analysis (limsa) v.1.0 software linear fit algorithm, in conjunction with a user-defined database of hypothetical lipid compounds for automated peak finding and correction of 13c isotope effects. relative […]

PMCID: 4926350
PMID: 27231903
DOI: 10.3390/ijms17060816

[…] sphingomyelin and phosphatidylserine. lipidsearch program combined with hrms was successfully used for lipid annotation in multiple studies [,,,,,]. several other programs such as lipidqa [], limsa [], faatc [], lipid [], lipidview [], lipidinspector [] (herzog et al.) are specialized in identification of lipids from the shotgun experiments. extensive review of bioinformatics tools […]

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LIMSA institution(s)
Institute of Biomedicine, Department of Biochemistry, University of Helsinki, Helsinki, Finland

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