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lincRNA identification software tools | RNA sequencing data analysis

Long intergenic noncoding RNAs (lincRNAs) have emerged as critical participators in gene regulation in myriads of cell types. The development of the whole transcriptome sequencing technology, or RNA-seq, has enabled novel lincRNA detection, but the…
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iSeeRNA
Web
Desktop

iSeeRNA

Classifies the identification of lincRNAs. iSeeRNA is implemented for high…

Classifies the identification of lincRNAs. iSeeRNA is implemented for high throughput screening of lincRNAs from transcriptome sequencing data. This tool demonstrates high prediction accuracy and…

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Sebnif
Desktop

Sebnif Self-estimation based novel lincRNA filter pipeline

An integrative bioinformatics pipeline to facilitate the discovery of bona fide…

An integrative bioinformatics pipeline to facilitate the discovery of bona fide novel lincRNAs that are suitable for further functional characterization. Specifically, sebnif is the only pipeline…

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sRNAscanner
Desktop

sRNAscanner

Provides a simple position weight matrix (PWM)-based strategy for the discovery…

Provides a simple position weight matrix (PWM)-based strategy for the discovery of intergenic small RNAs (sRNAs) genes. sRNAscanner is a method that predicts large numbers of potential sRNA genes in…

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PsRNA
Web

PsRNA

Assists in the determination of regions of suspected RNAs using information…

Assists in the determination of regions of suspected RNAs using information obtained from the RNA of interest. PsRNA is a computing engine for locating all such functionally important regions in…

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