Protocols

Linkage Disequilibrium with Several Options specifications

Information


Unique identifier OMICS_18125
Name Linkage Disequilibrium with Several Options
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Fortran
Computer skills Advanced
Version 1.02
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Florence Ytournel

Linkage Disequilibrium with Several Options citations

 (2)
library_books

CLIP Test: a new fast, simple and powerful method to distinguish between linked or pleiotropic quantitative trait loci in linkage disequilibria analysis

2012
Heredity
PMCID: 3668649
PMID: 23250009
DOI: 10.1038/hdy.2012.70

[…] fected the two traits. A QTL region of 0.1 (or 0.01) M containing 203 (or 263) equally spaced SNPs was then simulated to mimic 60 K (or 800 K) assay genotypes. Genotypes were simulated with the LDSO (Linkage Disequilibrium with Several Options) software (INRA, Jouy-en-Josas, France) (). The initial SNP allele frequencies were drawn at random from a uniform distribution. There was no initial disequ […]

call_split

Does probabilistic modelling of linkage disequilibrium evolution improve the accuracy of QTL location in animal pedigree?

2010
PMCID: 2984385
PMID: 20969751
DOI: 10.1186/1297-9686-42-38
call_split See protocol

[…] tions were carried out in order to compare these methods in the specific design of half-sib families. For each simulation, 500 replicates were performed.The populations were simulated using the LDSO (Linkage Disequilibrium with Several Options) program developed in Fortran 90 by [] and based on the gene-dropping method []. There was no constraint on the QTL frequency, but we discarded simulations […]

Linkage Disequilibrium with Several Options institution(s)
Department of Animal Sciences, Animal Breeding and Genetics, Göttingen, Germany

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