Linked TCGA specifications


Unique identifier OMICS_19002
Name Linked TCGA
Alternative name Linked Cancer Genome Atlas Database
Restrictions to use None
Database management system SPARQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • person_outline Shanmukha Padmanabhuni
  • person_outline Stefan Decker

Additional information

Linked TCGA citations


MediSyn: uncertainty aware visualization of multiple biomedical datasets to support drug treatment selection

BMC Bioinformatics
PMCID: 5606218
PMID: 28929971
DOI: 10.1186/s12859-017-1785-7

[…] To facilitate knowledge discovery from dispersed and heterogeneous biomedical datasets, some projects, such as Linked TCGA (The Cancer Genome Atlas Database) [] and Open PHACTS [], brought together pharmacological data resources and built data infrastructures to allow for the integration and interoperation of […]


TopFed: TCGA tailored federated query processing and linking to LOD

J Biomed Semantics
PMCID: 4417511
PMID: 25937882
DOI: 10.1186/2041-1480-5-47

[…] et cancer treatment, mechanism-based cancer treatment, and survival outcome, where the Linked Data approach of integrating TCGA data was used. More recently, a visualization of the integration of the Linked TCGA cancer data with PubMed publications is presented in [, ]. The main aim behind this work is to foster serendipity through big data RDFization, continuous integration, and visualization. Ge […]

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