LinkerDB specifications

Information


Unique identifier OMICS_09654
Name LinkerDB
Alternative name Linker DataBase
Restrictions to use None
Maintained Yes

Publication for Linker DataBase

LinkerDB citations

 (2)
library_books

Biomolecular engineering for nanobio/bionanotechnology

2017
PMCID: 5401866
PMID: 28491487
DOI: 10.1186/s40580-017-0103-4

[…] atabase has expanded tremendously during the last decade, no further updates or improvements were made to the LINKER website since it was created, and it is no longer accessible.The web-based program LinkerDB (http://www.ibi.vu.nl/programs/linkerdbwww/) also provides a database containing linker sequences with various confirmations and a search engine. The search algorithm accepts several query ty […]

library_books

Structural assembly of two domain proteins by rigid body docking

2008
BMC Bioinformatics
PMCID: 2579442
PMID: 18925951
DOI: 10.1186/1471-2105-9-441

[…] the assembled structures; finally we docked them as rigid-bodies with ZDOCK [], and scored the docking poses with pyDock. Docking poses were further rescored with distance restraints derived from the linker database, according to linker sequence length (pyDockTET method). In order to evaluate the success of our predictions, we have defined an acceptable docking pose as one where the RMSD of one of […]

LinkerDB institution(s)
Division of Mathematical Biology, National Institute for Medical Research, The Ridgeway, Mill Hill, UK; Informatica Ltd, London, UK

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