LinkImpute pipeline

LinkImpute specifications

Information


Unique identifier OMICS_19552
Name LinkImpute
Alternative name LinkImputeR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some next-generation DNA sequence data.
Input format VCF
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Source code URL http://www.cultivatingdiversity.org/uploads/5/8/2/9/58294859/linkimputer-src.tar.gz
Maintained Yes

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Maintainer


  • person_outline Daniel Money <>

Publications for LinkImpute

LinkImpute citation

2017
PMCID: 5716196

[…] 50% mcr and 20% mcr tgbs (grl2) snp sets in the ibm rils with the same filtering described for segmentation using asmap (32). linkimpute (33) was run with the default settings. snps imputed from linkimpute and unimputed snps for each mcr were imported into asmap (32) for map construction. rils with high similarity were detected using the comparegeno function. six rils (m0122, m0173, m0177, […]

LinkImpute institution(s)
Department of Plant and Animal Sciences, Faculty of Agriculture, Dalhousie University, Truro, Nova Scotia, Canada
LinkImpute funding source(s)
Supported by a Genome Canada Bioinformatics and Computational Biology grant; the Canada Research Chairs program; and the National Sciences and Engineering Research Council of Canada.

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