LinkImpute pipeline
LinkImpute specifications
Information
| Unique identifier | OMICS_19552 |
|---|---|
| Name | LinkImpute |
| Alternative name | LinkImputeR |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | Some next-generation DNA sequence data. |
| Input format | VCF |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | Stable |
| Source code URL | http://www.cultivatingdiversity.org/uploads/5/8/2/9/58294859/linkimputer-src.tar.gz |
| Maintained | Yes |
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Maintainer
- person_outline Daniel Money <>
Publications for LinkImpute
2017 BMC Genomics
PMID: 28693460
DOI: 10.1186/s12864-017-3873-5
2015 G3
PMID: 26377960
DOI: 10.1534/g3.115.021667
LinkImpute citation
2017
PMCID: 5716196
[…] 50% mcr and 20% mcr tgbs (grl2) snp sets in the ibm rils with the same filtering described for segmentation using asmap (32). linkimpute (33) was run with the default settings. snps imputed from linkimpute and unimputed snps for each mcr were imported into asmap (32) for map construction. rils with high similarity were detected using the comparegeno function. six rils (m0122, m0173, m0177, […]
LinkImpute institution(s)
Department of Plant and Animal Sciences, Faculty of Agriculture, Dalhousie University, Truro, Nova Scotia, Canada
LinkImpute funding source(s)
Supported by a Genome Canada Bioinformatics and Computational Biology grant; the Canada Research Chairs program; and the National Sciences and Engineering Research Council of Canada.
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