linkyx specifications

Information


Unique identifier OMICS_07702
Name linkyx
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output format As an output of the pipeline, user gets a FASTA file with candidate transcriptionally active sex-linked genes, sorted by their relevance. At the same time, a BAM file with identified genes and alignment of reads is also provided.
Operating system Unix/Linux
Programming languages Perl, Python, Shell (Bash)
License Academic Free License version 3.0
Computer skills Advanced
Stability Stable
Requirements Java
Maintained Yes

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Documentation


Maintainer


  • person_outline Monika Michalovova <>

Information


Unique identifier OMICS_07702
Name linkyx
Interface Web user interface
Restrictions to use None
Output format As an output of the pipeline, user gets a FASTA file with candidate transcriptionally active sex-linked genes, sorted by their relevance. At the same time, a BAM file with identified genes and alignment of reads is also provided.
Programming languages Perl, Python, Shell (Bash)
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Monika Michalovova <>

Publication for linkyx

linkyx institution(s)
Department of Plant Developmental Genetics, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, CZ, Czech Republic; Centre of the Region Hana for Biotechnological and Agricultural Research, Institute of Experimental Botany, Slechtitelu 31, Olomouc, Czech Republic

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