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LipidBlast specifications

Information


Unique identifier OMICS_02516
Name LipidBlast
Restrictions to use None
Maintained Yes

Publication for LipidBlast

LipidBlast citations

 (22)
library_books

Associations of the plasma lipidome with mortality in the acute respiratory distress syndrome: a longitudinal cohort study

2018
PMCID: 5894233
PMID: 29636049
DOI: 10.1186/s12931-018-0758-3

[…] Lipids were identified using the LIPIDBLAST computer-generated tandem MS library []. This database contains 212,516 spectra covering 119,200 compounds representing 26 lipid classes, including phospholipids, glycerolipids, bacterial l […]

library_books

Serum profile changes in postpartum women with a history of childhood maltreatment: a combined metabolite and lipid fingerprinting study

2018
Sci Rep
PMCID: 5823924
PMID: 29472571
DOI: 10.1038/s41598-018-21763-6

[…] DG(18:0/20:3/0:0). MS-DIAL (version 2.54) was used to compare MS/MS fragmentation data obtained from LC-MS/MS runs at fixed collision energies (10, 20, 40 V) against in-built MS/MS reference library LipidBlast. In addition, selected metabolite fragmentation information was directly exported from MS-DIAL into MS-Finder (version 2.10) for further spectra comparison. MS-FINDER predicts molecular for […]

library_books

Dynamic remodeling of lipids coincides with dengue virus replication in the midgut of Aedes aegypti mosquitoes

2018
PLoS Pathog
PMCID: 5814098
PMID: 29447265
DOI: 10.1371/journal.ppat.1006853

[…] with mass accuracy of <6 ppm error was further classified into metabolic classes. Features with MS/MS data were further validated by searching against the NIST MS/MS (2014) (Agilent Technologies) and LipidBlast (2012) [] libraries using MS PepSearch (2013) [] and manually inspected using NIST MS Search (v2.0) []. […]

library_books

Lipidomics unveils the complexity of the lipidome in metabolic diseases

2018
PMCID: 5786598
PMID: 29374337
DOI: 10.1186/s40169-018-0182-9

[…] o include automated searches against metabolite databases such as lipid MAPS (http://www.lipidmaps.org), Lipid Bank (http://lipidbank.jp/), LipidHOME (http://www.ebi.ac.uk/metabolights/lipidhome) and LipidBlast (http://fiehnlab.ucdavis.edu/projects/lipidblast) [, ]. Freely available software which combines one or more of the above steps includes the Analysis of Lipid Experiments (ALEX), Lipostar, […]

library_books

Multi omics analyses of red blood cell reveal antioxidation mechanisms associated with hemolytic toxicity of gossypol

2017
Oncotarget
PMCID: 5732760
PMID: 29262594
DOI: 10.18632/oncotarget.21779

[…] 00 Da. Parent ions were selected automatically using the IDA model in MS2. Collision energy was set at 35±15 ev. Metabolites according to UPLC-QTOF were identified by matching the MS1 and MS2 data in Lipidblast []. UPLC-QTOF raw data were transferred into mzXML format using the MSConvert software from Proteowizard []. Deconvoluted MS1 data (parent ions) and corresponding MS2 data (daughter ions) w […]

call_split

Metabolomic characteristics of cholesterol induced non obese nonalcoholic fatty liver disease in mice

2017
Sci Rep
PMCID: 5522413
PMID: 28733574
DOI: 10.1038/s41598-017-05040-6
call_split See protocol

[…] ocess the raw data and lipids were reported only when detected in 50% of samples in each group. Annotations were made based on an in-house accurate mass and retention time lipid library created using LipidBlast, as described previously. […]

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LipidBlast institution(s)
Metabolics Core, UC Davis Genome Center, University of California, Davis, Davis, CA, USA

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