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LipidHome specifications

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Unique identifier OMICS_03015
Name LipidHome
Restrictions to use None
Version 1.0
Maintained Yes

Publication for LipidHome

LipidHome citations

 (7)
library_books

Lipidomics unveils the complexity of the lipidome in metabolic diseases

2018
PMCID: 5786598
PMID: 29374337
DOI: 10.1186/s40169-018-0182-9

[…] ernal standard. Ideally, a data analysis platform should also include automated searches against metabolite databases such as lipid MAPS (http://www.lipidmaps.org), Lipid Bank (http://lipidbank.jp/), LipidHOME (http://www.ebi.ac.uk/metabolights/lipidhome) and LipidBlast (http://fiehnlab.ucdavis.edu/projects/lipidblast) [, ]. Freely available software which combines one or more of the above steps i […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] , and LipidQA [] are all tools for processing, annotating, and analyzing lipidomics data. Lipids databases include LIPID MAPS [], LIPIDBANK [], LipidBlast [], and in silico generated lipids databases LipidHome [], SwissLipids [] ,and ARALIP []. […]

library_books

LipidFrag: Improving reliability of in silico fragmentation of lipids and application to the Caenorhabditis elegans lipidome

2017
PLoS One
PMCID: 5344313
PMID: 28278196
DOI: 10.1371/journal.pone.0172311

[…] (PR) saccharolipids (SL) and polyketides (PK), each with several subclasses. Lipid Maps contains currently 40,360 structures (accession date 4/2/15) and is accessible via the web (www.lipidmaps.org). LipidHome was developed at the European Bioinformatics Institute (EBI) and is a database of theoretical lipids with 20,297 species and 36 million theoretical sub species []. SwissLipids as another res […]

library_books

Recent advances in expanding the coverage of the lipidome

2017
PMCID: 5312421
PMID: 27915214
DOI: 10.1016/j.copbio.2016.11.008

[…] For instance, the generation of lipid databases and the tools to cross-compare them with experimentally obtained lipidomics data has been an important development. Examples are LipidMaps, LipidBank, LipidHome, LipidBlast, and LipidSearch [, , , , ]. The lipidomics field has particularly benefited from continued developments in mass spectrometry; the ever-increasing sensitivity, resolution, speed, […]

library_books

Mapping the Human Platelet Lipidome Reveals Cytosolic Phospholipase A2 as a Regulator of Mitochondrial Bioenergetics during Activation

2016
PMCID: 4873619
PMID: 27133131
DOI: 10.1016/j.cmet.2016.04.001

[…] en individuals is noted, with each donor being ∼84% the same as two or more donors, or 63.7% the same as all three (A and 1B).Results were queried against Human Metabolome Database (HMDB), LipidMaps, LipidHome, and METLIN, with tolerance of 5 ppm (A and S1B) (, , , ). Many identified with multiple names, in a few cases with HMDB, as many as 200–300 (B). Thus, to putatively assign an ion to a lipid […]

library_books

The mzTab Data Exchange Format: Communicating Mass spectrometry based Proteomics and Metabolomics Experimental Results to a Wider Audience*

2014
PMCID: 4189001
PMID: 24980485
DOI: 10.1074/mcp.O113.036681

[…] generally be entries in compound databases used in the respective field—for example, Human Metabolome Database entries () or identifiers from Chemical Entities of Biological Interest (), PubChem (), LipidHome (), or LIPID MAPS (). Apart from these unique identifiers, small molecules can be assigned a chemical formula; Simplified Molecular-input Line-entry System (SMILES) and/or IUPAC Internationa […]

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LipidHome institution(s)
EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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