Workflow

LipidMatch

Allows annotation of lipids across a wide range of high resolution tandem mass spectrometry (MS/MS) studies. LipidMatch is based on an accurate assumption of multiple co-eluting lipids sharing m/z values. It was evaluated using data acquired from a Q-Exactive orbitrap mass spectrometer and an Agilent 6540 Q-TOF. The tool contains a large diversity in lipid types of any current open-source software platform and a rule-based strategy for identification and summed fragment intensity based strategy for ranking top hits.

LipidMatch specifications

Desktop

Information

Unique identifier	OMICS_19543
Name	LipidMatch
Software type	Application/Script
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux, Mac OS, Windows
Programming languages	R
Computer skills	Advanced
Stability	Stable
Maintained	Yes

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Versioning

No version available

Maintainer

Richard Yost

Publication for LipidMatch

LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data.

2017 BMC Bioinformatics

PMCID: 5504796

PMID: 28693421

DOI: 10.1186/s12859-017-1744-3

LipidMatch institution(s)

Department of Chemistry, University of Florida, Gainesville, FL, USA; College of Engineering, University of Florida, Gainesville, FL, USA; National Institute of Standards and Technology, Hollings Marine Laboratory, Charleston, SC, USA; Clinical and Translational Science Institute, University of Florida, Gainesville, FL, USA; Department of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, FL, USA

LipidMatch funding source(s)

Supported by NIH Grant #U24 DK097209.

LipidMatch review

Alan Maschek

2017-08-29, 17:41

Desktop

I've found LipidMatch to be a very powerful tool in our lipidomics workflow. The video tutorials are well done and will get users up and running very quickly. I strongly recommend this program.