LipidSearch specifications

Information


Unique identifier OMICS_02513
Name LipidSearch
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability Stable
Maintained No

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Publication for LipidSearch

LipidSearch in publications

 (22)
PMCID: 5787104
PMID: 29410629
DOI: 10.3389/fphys.2018.00014

[…] from uhplc-esi-hrms were exported as raw files by xcalibur (thermo scientific, san jose, ca). three-dimensional data set including m/z-values, retention times, and peak areas were extracted by lipidsearch software (thermo scientific, san jose, ca) to perform lipids identification and evaluate matching degrees by a, b, c, d four grades. orthogonal projection to latent structures […]

PMCID: 5760102
PMID: 29281741
DOI: 10.1371/journal.ppat.1006800

[…] (dg), sphingolipids, and cardiolipins (cl), but differ from their respective host cell of origin (). a total of 1079 lipid molecular species were confidently identified after manual curation of lipidsearch-assigned spectra, with coverage of 30 different lipid subclasses, across all samples ( and tables; supporting information: supplemental methods). over half of the lipids identified […]

PMCID: 5732162
PMID: 29247199
DOI: 10.1038/s41598-017-17389-9

[…] ned as the time between the appearance of the first symptoms of the disease and death., after the extraction of lipids, lipidomics profiles were performed by high-resolution mass spectrometry (hrms). lipidsearch™ and tracefinder™ version 3.3 software (thermo fisher scientific) were used for the characterization of lipid species., briefly, csf samples were thawed, centrifuged at 3000 g for 5 minute […]

PMCID: 5674068
PMID: 29109428
DOI: 10.1038/s41598-017-15132-y

[…] hplc column to a high resolution qexactive plus orbitrap mass spectrometer in a data dependent analysis (dda) with positive/negative polarity switching. the data was identified and quantified using lipidsearch with the integrated database and elements software (nist/hmdb database), annotated with lipidmaps and further processed with metaboanalyst software. lipidsearch software first identifies […]

PMCID: 5721409
PMID: 29404440
DOI: 10.1002/hep4.1108

[…] lc system coupled to a q exactive hybrid quadrupole‐orbitrap ms (thermo fisher scientific). a hypersil gold c18 analytic column (100 × 2.1 mm, 1.9 μm) was used for separation of lipids. lipidsearch software (thermo fisher) was used for lipid molecular species identification and quantification. the lipid classes selected for the search were triacylglycerol, diacylglycerol, ceramide, […]


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LipidSearch institution(s)
Graduate School of Pharmaceutical Sciences, Nagoya City University, Mizuho-ku, Nagoya City, Aichi, Japan

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