LipoP protocols

LipoP specifications

Information


Unique identifier OMICS_03885
Name LipoP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Anders Krogh <>

Publication for LipoP

LipoP IN pipelines

 (5)
2017
PMCID: 5817204
PMID: 28869408
DOI: 10.1099/mic.0.000516

[…] δssa_0351_c (ermr; ssa_0351+ :: pserm) was selected and confirmed by pcr analysis., we searched for proteins homologous to ssa_0351 in the s. sanguinis sk36 genome using the blastp algorithm. lipop 1.0 software (http://www.cbs.dtu.dk/services/lipop/) was used to predict the substrates of signal peptidases i and ii of all s. sanguinis sk36 proteins [24]. although this program […]

2017
PMCID: 5817204
PMID: 28869408
DOI: 10.1099/mic.0.000516

[…] and confirmed by pcr analysis., we searched for proteins homologous to ssa_0351 in the s. sanguinis sk36 genome using the blastp algorithm. lipop 1.0 software (http://www.cbs.dtu.dk/services/lipop/) was used to predict the substrates of signal peptidases i and ii of all s. sanguinis sk36 proteins [24]. although this program has been trained on gram-negative bacterial protein sequences, […]

2016
PMCID: 4881454
PMID: 27136546
DOI: 10.3390/ijms17050628

[…] mbov_rs02825 was performed with online blastp [55]. the signal peptide cleavage sites, its type of signal peptidase and transmembrane helices in mbovnase were predicted by using online signal ip, lipop 1.0 and tmhmm 2.0 server [56]., total mycoplasma dna was extracted from takara minibest bacteria genomic dna extraction kit (takara, dalian, china). after changing tga to tgg at six sites […]

2016
PMCID: 5080379
PMID: 27795390
DOI: 10.1128/mBio.01232-16

[…] lipoproteins, resulting in a final list of 43 surface-exposed predicted lipoproteins (see table s4 in the supplemental material). the spii cleavage site of each protein was then predicted using the lipop software (59) (1.0 server, default settings), showing that all proteins possess one clear spii cleavage site. accordingly, protein sequences were trimmed to their predicted mature form. lists […]

2013
PMCID: 3585158
PMID: 23469065
DOI: 10.1371/journal.pone.0057775

[…] to construct neighbor-joining (nj) trees [23]. genetic distances and trees were calculated using mega5 [24]. mag_5040 putative lipoprotein cleavage site and conserved domains were identified with lipop [25] and prosite scan [26], respectively. mag_5030 and mag_5080 3d modeling and structures were investigated by using the protein homology/analogy recognition engine (phyre) v 2.0 [27]., m. […]

LipoP institution(s)
Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark

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