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LIS specifications

Information


Unique identifier OMICS_04490
Name LIS
Alternative name Legume Information System
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Steven B. Cannon

Publications for Legume Information System

LIS citations

 (15)
library_books

The Sequenced Angiosperm Genomes and Genome Databases

2018
Front Plant Sci
PMCID: 5909171
PMID: 29706973
DOI: 10.3389/fpls.2018.00418

[…] enome projects, including both single genome centered and multiple genome databases: banana, cacao, citrus, cool season food legume, cotton, curcurbit, rosaceae, Vaccinium, hardwood genomics project, legume information system, Medicago truncatula, and peanut (Figure ). […]

library_books

Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.)

2018
PLoS One
PMCID: 5844515
PMID: 29522524
DOI: 10.1371/journal.pone.0189597

[…] the gene descriptors for these genes, are in . The markers and flanking sequences with physical map locations based on blastn, are in . The map information can also be interactively visualized in the Legume Information System (“LIS”; https://legumeinfo.org), in several contexts. The TOG-based map is viewable using CMap v. 1.01 [] with markers placed onto the Phaseolus vulgaris v1.0 GBrowse genome […]

library_books

Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases

2017
PMCID: 5727400
DOI: 10.1093/database/bax092

[…] od Genomics Database (http://www.hardwoodgenomics.org/) (), the i5k Workspace (https://i5k.nal.usda.gov/) (), the Cool Season Food Legume Database (CSFL, https://www.coolseasonfoodlegume.org) (), the Legume Information System (http://legumeinfo.org/) () and the Citrus Genome Database (CGD, http://www.citrusgenomedb.org) (). For a more extensive list of databases currently using Tripal see https:// […]

library_books

Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny

2017
Bioinformatics
PMCID: 5925771
PMID: 29194466
DOI: 10.1093/bioinformatics/btx757

[…] ustomized to interlink with other resources providing complementary functionality.GCV can be used as a standalone application or integrated into an existing website. It currently has instances at the Legume Information System (https://legumeinfo.org/lis_context_viewer) () and the Legume Federation where it is used to compare across genomes hosted at multiple member sites (https://legumefederation. […]

library_books

A high density consensus linkage map of white lupin highlights synteny with narrow leafed lupin and provides markers tagging key agronomic traits

2017
Sci Rep
PMCID: 5681670
PMID: 29127429
DOI: 10.1038/s41598-017-15625-w

[…] Linkage groups were drawn in MapChart. Sequence collinearity blocks were visualized using Genome Synteny Viewer, Circos and Legume Information System. […]

library_books

A transcriptome SNP derived linkage map of Apios americana (potato bean) provides insights about genome re organization and synteny conservation in the phaseoloid legumes

2017
PMCID: 5787225
PMID: 29071392
DOI: 10.1007/s00122-017-3004-3

[…] nique sequences were used to create a “refined” reference transcriptome, which we used for aligning the mapping populations and for SNP calling. The refined transcriptome assembly is available at the Legume Information System Data Store, https://legumeinfo.org/data/public/Apios_americana (Dash et al. ).The transcript sequences in the refined assembly were provisionally ordered relative to P. vulga […]

Citations

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LIS institution(s)
National Center for Genome Resources, Santa Fe, NM, USA; USDA-ARS-CICGR and Department of Agronomy, Iowa State University, Ames, IA, USA; Bio5, University of Arizona, Tucson, AR, USA
LIS funding source(s)
USDA-ARS project funding for the Legume Information System; National Science Foundation [IOS-1444806]

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