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LIS specifications


Unique identifier OMICS_04490
Name LIS
Alternative name Legume Information System
Restrictions to use None
Maintained Yes


  • person_outline Steven B. Cannon

Publications for Legume Information System

LIS citations


The Sequenced Angiosperm Genomes and Genome Databases

Front Plant Sci
PMCID: 5909171
PMID: 29706973
DOI: 10.3389/fpls.2018.00418

[…] enome projects, including both single genome centered and multiple genome databases: banana, cacao, citrus, cool season food legume, cotton, curcurbit, rosaceae, Vaccinium, hardwood genomics project, legume information system, Medicago truncatula, and peanut (Figure ). […]


Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.)

PLoS One
PMCID: 5844515
PMID: 29522524
DOI: 10.1371/journal.pone.0189597

[…] the gene descriptors for these genes, are in . The markers and flanking sequences with physical map locations based on blastn, are in . The map information can also be interactively visualized in the Legume Information System (“LIS”;, in several contexts. The TOG-based map is viewable using CMap v. 1.01 [] with markers placed onto the Phaseolus vulgaris v1.0 GBrowse genome […]


Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases

PMCID: 5727400
DOI: 10.1093/database/bax092

[…] od Genomics Database ( (), the i5k Workspace ( (), the Cool Season Food Legume Database (CSFL, (), the Legume Information System ( () and the Citrus Genome Database (CGD, (). For a more extensive list of databases currently using Tripal see https:// […]


Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny

PMCID: 5925771
PMID: 29194466
DOI: 10.1093/bioinformatics/btx757

[…] ustomized to interlink with other resources providing complementary functionality.GCV can be used as a standalone application or integrated into an existing website. It currently has instances at the Legume Information System ( () and the Legume Federation where it is used to compare across genomes hosted at multiple member sites (https://legumefederation. […]


A high density consensus linkage map of white lupin highlights synteny with narrow leafed lupin and provides markers tagging key agronomic traits

Sci Rep
PMCID: 5681670
PMID: 29127429
DOI: 10.1038/s41598-017-15625-w

[…] Linkage groups were drawn in MapChart. Sequence collinearity blocks were visualized using Genome Synteny Viewer, Circos and Legume Information System. […]


A transcriptome SNP derived linkage map of Apios americana (potato bean) provides insights about genome re organization and synteny conservation in the phaseoloid legumes

PMCID: 5787225
PMID: 29071392
DOI: 10.1007/s00122-017-3004-3

[…] nique sequences were used to create a “refined” reference transcriptome, which we used for aligning the mapping populations and for SNP calling. The refined transcriptome assembly is available at the Legume Information System Data Store, (Dash et al. ).The transcript sequences in the refined assembly were provisionally ordered relative to P. vulga […]


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LIS institution(s)
National Center for Genome Resources, Santa Fe, NM, USA; USDA-ARS-CICGR and Department of Agronomy, Iowa State University, Ames, IA, USA; Bio5, University of Arizona, Tucson, AR, USA
LIS funding source(s)
USDA-ARS project funding for the Legume Information System; National Science Foundation [IOS-1444806]

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