LiteMol statistics

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Citations per year

Number of citations per year for the bioinformatics software tool LiteMol
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Tool usage distribution map

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LiteMol specifications

Information


Unique identifier OMICS_20313
Name LiteMol
Alternative name LiteMol Viewer
Interface Web user interface
Restrictions to use None
Programming languages Javascript
Computer skills Basic
Stability Stable
Maintained Yes

Download


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Documentation


Maintainers


  • person_outline David Sehnal
  • person_outline Oliver Grant

Additional information


http://webchemdev.ncbr.muni.cz/Litemol/Viewer/

Information


Unique identifier OMICS_20313
Name LiteMol
Alternative name LiteMol Viewer
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript, Other
License Apache License version 2.0
Computer skills Medium
Version 2
Stability Stable
Maintained Yes

Download


download.png
github.png

Versioning


No version available

Documentation


Maintainers


  • person_outline David Sehnal
  • person_outline Oliver Grant

Additional information


http://webchemdev.ncbr.muni.cz/Litemol/Viewer/

Publication for LiteMol

LiteMol citations

 (3)
library_books

The 2018 Nucleic Acids Research database issue and the online molecular biology database collection

2017
Nucleic Acids Res
PMCID: 5753253
PMID: 29316735
DOI: 10.1093/nar/gkx1235

[…] active Tree of Life (iTOL) tool (). Another update from PDBe () includes mention of a newly developed library of freely available web components for interactive data visualizations. One of these, the LiteMol 3D viewer, notably allows convenient display of electron density in the browser window. An update on the popular ELM database of protein sequence motifs () reports, among other developments, o […]

library_books

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

2017
Nucleic Acids Res
PMCID: 5753225
PMID: 29126160
DOI: 10.1093/nar/gkx1070

[…] maintaining backwards compatibility. The PDBe REST API has been integrated into various external tools and services, such as the Volume Slicer () for Electron Microscopy Data Bank (EMDB; ()) entries, LiteMol (Sehnal et al. in press), Jmol/JSmol () and Coot () to display SIFTS mappings and/or validation information, and JalView () to directly query PDB data from the viewer. […]

library_books

Aberrant coordination geometries discovered in the most abundant metalloproteins

2017
Proteins
PMCID: 5389913
PMID: 28142195
DOI: 10.1002/prot.25257

[…] sed angles are much less distinct for these metal sites.Figures and provide specific structural examples for each aberrant metal cluster described in Tables and . These images were generated using LiteMol and illustrate well‐defined metal‐ion coordinating structures overlaid onto their respective electron density maps in blue mesh (2Fo – Fc) with very little red and green mesh present that woul […]


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LiteMol institution(s)
CEITEC - Central European Institute of Technology, Masaryk University Brno, Brno-Bohunice, Czech Republic; National Centre for Biomolecular Research, Faculty of Science, Brno-Bohunice, Czech Republic; Protein Data Bank in Europe (PDBe), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBLEBI), Wellcome Genome Campus, Cambridge, UK; Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA
LiteMol funding source(s)
Supported by the National Institutes of Health (U01CA207824); the ELIXIR-EXCELERATE project (676559); ELIXIR CZ research infrastructure project (LM2015047); European Regional Development Fund-Project ELIXIR-CZ (no. CZ.02.1.01/0.0/0.0/16_013/0001777); Wellcome Trust (104948) and EMBL-EBI.

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