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LitMiner specifications


Unique identifier OMICS_25684
Name LitMiner
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No


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Publications for LitMiner

LitMiner citations


Automated seeding of specialised wiki knowledgebases with BioKb

PMCID: 2753848
PMID: 19758431
DOI: 10.1186/1471-2105-10-291

[…] of a more generic knowledgebase, similarly to wikipedia. wikigenes [] is a good example of this, and deals specifically with provenance, as a key issue in the application of wiki technology. litminer [] employs an associated wiki for collaborative editing of the links between genes, tissues, diseases and compounds. the ease of use and collaborative nature of wiki technology has also led […]


Regulatory module network of basic/helix loop helix transcription factors in mouse brain

PMCID: 2258200
PMID: 18021424
DOI: 10.1186/gb-2007-8-11-r244

[…] using the tool gotm [,], which reports enrichment (hypergeometric p value, benjaminni correction) with respect to go categories., literature data mining was performed with the web-based tool litminer []. litminer is a literature data mining tool that is based on the annotation of key terms in article abstracts present in pubmed []. this was followed by statistical co-citation analysis […]


Novel subtractive transcription based amplification of mRNA (STAR) method and its application in search of rare and differentially expressed genes in AD brains

PMCID: 1637111
PMID: 17090317
DOI: 10.1186/1471-2164-7-286

[…] changes of nearly 80 unique genes were further confirmed by qrt-pcr and the association of additional genes with ad and/or neurodegeneration was established using an in-house literature mining tool (litminer)., the star process significantly amplifies unique and rare sequences relative to abundant housekeeping genes and, as a consequence, identifies genes not previously linked to ad. this method […]


Linking disease associated genes to regulatory networks via promoter organization

PMCID: 549397
PMID: 15701758
DOI: 10.1093/nar/gki230

[…] the numbers in ., literature analysis software (step 1): current data from literature on subject-related gene expression, gene function and gene–disease relationship were collected with the programs litminer (gsf, h. maier, s. döhr, k. grote, s. o'keeffe, t. werner, m. hrabé de angelis and r. schneider, in preparation), bibliosphere™ (genomatix), genecards™ (), and omim ()., the litminer […]

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LitMiner institution(s)
CISTI Research, Canada Institute for Scientific and Technical Information, National Research Council of Canada, Ottawa, ON, Canada; Interactive Information, Institute for Information Technology, National Research Council of Canada, ON, Canada

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