LjGEA specifications

Information


Unique identifier OMICS_12494
Name LjGEA
Alternative name Lotus japonicus Gene Expression Atlas
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Maintainer


  • person_outline Michael Udvardi

Publication for Lotus japonicus Gene Expression Atlas

LjGEA citations

 (2)
library_books

In BPS1 Downregulated Roots, the BYPASS1 Signal Disrupts the Induction of Cortical Cell Divisions in Bean Rhizobium Symbiosis

2018
Genes
PMCID: 5793164
PMID: 29301366
DOI: 10.3390/genes9010011

[…] es of Lotus japonicus, Medicago truncatula, Glycine max, and P. vulgaris by sequence-based homology search using BLASTP search from the genome databases L. japonicus gene expression atlas V2 (https://ljgea.noble.org/v2/) and Phytozome v12.1 (http://www.phytozome.net). The presence of Bypass1/DUF793 domain (PF05633) in identified sequences was verified in the Pfam database (http://pfam.xfam.org/) u […]

library_books

Genome Wide Analysis of Homeobox Gene Family in Legumes: Identification, Gene Duplication and Expression Profiling

2015
PLoS One
PMCID: 4352023
PMID: 25745864
DOI: 10.1371/journal.pone.0119198

[…] expression atlas (LjGEA) [] and Medicago truncatula gene expression atlas (MtGEA) [], respectively. Probe set IDs corresponding to Lotus homeobox genes were identified by BLASTN utility available at LjGEA, whereas probe set IDs corresponding to Medicago homeobox genes were identified using online Plexdb Blast (BLASTN) utility (http://www.plexdb.org/). For genes with more than one probe set ID, th […]

LjGEA institution(s)
Samuel Roberts Noble Foundation, Ardmore, OK, USA; John Innes Centre, Norwich Research Park, Colney, Norwich, UK
LjGEA funding source(s)
The Lotus japonicus Gene Expression Atlas project is supported by the National Research Initiative (NRI) Plant Genome Program of the USDA Cooperative State Research, Education and Extension Service (CSREES).

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