LNA_GNA specifications

Information


Unique identifier OMICS_14926
Name LNA_GNA
Alternative name Local Network Alignment_Global Network Alignment
Software type Framework/Library
Interface Graphical user interface
Restrictions to use None
Input data The list of aligned node pairs in tab-delimited format, the two networks in LEDA format, the file containing the list of node pairs that are known to be mapped to each other according to true node mapping, the files containing the list of gene-GO term annotations for nodes in the two networks, the list of desired topological or biological alignment quality measures.
Output data The results in tab-delimited format with the first and second columns denoting the measures used and their corresponding alignment quality scores.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Medium
Stability Stable
Requirements
SciPy, wxPython
Source code URL https://www3.nd.edu/~cone/LNA_GNA/source%20code.zip
Maintained Yes

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Maintainer


  • person_outline Tijana Milenkovic <>

Publication for Local Network Alignment_Global Network Alignment

LNA_GNA institution(s)
Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN, USA; ECK Institute of Global Health and Interdisciplinary Center for Network Science and Applications, University of Notre Dame, Notre Dame, IN, USA; Wireless Institute, University of Notre Dame, Notre Dame, IN, USA
LNA_GNA funding source(s)
National Science Foundation (CAREER CCF-1452795, CCF-1319469 and IIS-0968529)

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