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lnCeDB specifications


Unique identifier OMICS_06104
Name lnCeDB
Restrictions to use None
Maintained Yes


  • Primates
    • Homo sapiens

Publication for lnCeDB

lnCeDB citations


Molecular Network Based Identification of Competing Endogenous RNAs in Thyroid Carcinoma

PMCID: 5793195
PMID: 29351231
DOI: 10.3390/genes9010044

[…] RNAs in human Cancers dbDEMC []. In addition, miRNA-target interaction databases including miRcode [] and miRanda [,,,,,,,], and ceRNA databases such as long non-coding competing endogenous database (lnCeDB) [] have been developed, which provide much useful information.In this study, we develop a novel pipeline called Molecular Network-based Identification of ceRNA (MNIceRNA) to identify ceRNAs in […]


Long Non coding RNA in Neurons: New Players in Early Response to BDNF Stimulation

PMCID: 4773593
PMID: 26973456
DOI: 10.3389/fnmol.2016.00015

[…] Visualization, and Integrated Discovery), which uses Gene Ontology (GO) to identify the molecular function represented in the gene profile (). We obtained a list of potentially regulated miRNAs from lnCeDB, a database that provides human lncRNAs (version Gencode 19) that can potentially act as competitive endogenous RNAs (ceRNAs) and interfere with the pathway of miRNAs (). These miRNAs were anal […]


Identification of lncRNA associated competing triplets reveals global patterns and prognostic markers for cancer

Nucleic Acids Res
PMCID: 4402541
PMID: 25800746
DOI: 10.1093/nar/gkv233

[…] d the hypergeometric test method, starBase v.2.0 applies ceRNAFunction web tools to predict the function of ncRNAs and provides Pan-Cancer ceRNA networks (). Another lncRNA-associated ceRNA database, lnCeDB, provides tissue-specific information on ceRNAs but contains only a small number of AGO CLIP-supported interactions (). The cross-species ceRNA database HumanViCe has been established to invest […]

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lnCeDB institution(s)
Computational Biology Group, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India

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