Lncin specifications

Information


Unique identifier OMICS_13562
Name Lncin
Alternative name lncRNA interaction
Interface Web user interface
Restrictions to use None
Input data User-uploaded gene expression data, lncRNA and mRNA expression profile
Input format TXT
Output data A table with identified lncRNA-associated modules, the ppi protein count, the p-value, graphs for each lncRNA module, enriched functions (summary table, integrative graph), lncRNA function, association network, integrative network
Output format PNG, SVG, PDF, SIF, XGMML, GraphML, TXT
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


Maintainer


  • person_outline Hsuan-Cheng Huang

Publication for lncRNA interaction

Lncin citation

library_books

Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination

2016
Biomed Res Int
PMCID: 5153550
PMID: 28042575
DOI: 10.1155/2016/8496165

[…] n cancer can be regarded as biomarkers and therapeutic targets because of its extremely specific expression []. The LncRNADisease database now integrates more than 1000 lncRNA-disease entries and 475 lncRNA interaction entries, which suggested that lncRNAs are associated with diseases closely [].Since lncRNAs so closely interact with diseases, many lncRNA-disease association detection tools are in […]

Lncin institution(s)
Institute of Biotechnology in Medicine, National Yang-Ming University, Taipei, Taiwan; Institute of Biomedical Informatics, Center for Systems and Synthetic Biology, National Yang-Ming University, Taipei, Taiwan; Department of Life Science, National Taiwan University, Taipei, Taiwan; Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan; Graduate Institute of Biomedical Electronics and Bioinformatics, Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan
Lncin funding source(s)
This work was supported by Ministry of Science and Technology, Taiwan (102-2628-B-002-041-MY3, 103-2320-B-010-031-MY3, and 104-2628-E-010-001-MY3), National Health Research Institutes (NHRI-EX105-10530PI), National Taiwan University (NTU-CDP-105R7717), and The Professor Tsuei-Chu Mong Merit Scholarship.

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