LncPipe specifications

Information


Unique identifier OMICS_31131
Name LncPipe
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Groovy, R
License GNU General Public License version 3.0
Computer skills Advanced
First release date 2018
Stability Stable
Requirements
HISAT2, StringTie, gffcompare, Bedops, PLEK, CNCI, CPAT:Citation, fastp, FastQC, AfterQC, LncPipeReporter, kallisto, sambamba, STAR, Cufflinks
Maintained Yes

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Documentation


Maintainers


  • person_outline Jian Zheng <>
  • person_outline Qi Shao <>

Publication for LncPipe

LncPipe institution(s)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangdong, China; School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, China; Department of Thoracic Surgery, China Meitan General Hospital, Beijing, China; State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangdong, China; State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangdong, China
LncPipe funding source(s)
Supported by grants from the National Key Research and Development Program (2017YFA0106700), National Natural Science Foundation of China (81772614, U1611261, 81772586 and 81602461), China Postdoctoral Science Foundation (2017M610573), Young Elite Scientists Sponsorship Program by CAST (2017QNRC001), Guangdong Province Universities and Colleges Pearl River Scholar Funded Scheme, and Fundamental Research Funds for the Central Universities (SYSU:17ykzd32).

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