ALDB
ALDB
Enables the exploration and comparative analysis of lncRNAs in domestic animals. A…
Enables the exploration and comparative analysis of lncRNAs in domestic animals. A user-friendly web interface, integrated information and tools make it valuable to researchers in their studies. ALDB currently archives 12,103 pig intergenic lncRNAs…
AnnoLnc
AnnoLnc
An online portal for systematically annotating newly identified human lncRNAs. AnnoLnc…
An online portal for systematically annotating newly identified human lncRNAs. AnnoLnc offers a full spectrum of annotations covering genomic location, RNA secondary structure, expression, transcriptional regulation, miRNA interaction, protein…
CANTATAdb
CANTATAdb
An online database of long non-coding RNAs (lncRNAs) in 10 model plant species. The…
An online database of long non-coding RNAs (lncRNAs) in 10 model plant species. The lncRNAs were identified computationally using dozens of publicly available RNA sequencing (RNA-Seq) libraries. Expression values, coding potential, sequence…
ChIPBase
ChIPBase
An integrated resource and platform for decoding transcription factor binding maps,…
An integrated resource and platform for decoding transcription factor binding maps, expression profiles and transcriptional regulation of long non-coding RNAs (lncRNAs, lincRNAs), microRNAs, other ncRNAs (snoRNAs, tRNAs, snRNAs, etc.) and…
Co-LncRNA
Co-LncRNA
A web-based computational tool that allows users to identify GO annotations and KEGG…
A web-based computational tool that allows users to identify GO annotations and KEGG pathways that may be affected by co-expressed protein-coding genes of a single or multiple lncRNAs. LncRNA co-expressed protein-coding genes were first identified…
Danshen Transcriptional Resource Database
Danshen Transcriptional Resource Database
DsTRD
A comprehensive transcript resource for Salvia miltiorrhiza. DsTRD contains 76531…
A comprehensive transcript resource for Salvia miltiorrhiza. DsTRD contains 76531 transcribed sequences assembled from the RNA-seq data. DsTRD provides information regarding the sequences and functional annotations of the transcripts, including…
fRNAdb
fRNAdb
A database service that hosts a large collection of non-coding transcripts including…
A database service that hosts a large collection of non-coding transcripts including annotated/non-annotated sequences from the H-inv database, NONCODE and RNAdb. fRNAdb provides an efficient interface to help users filter out particular transcripts…
GENCODE
GENCODE
Aims to identify all gene features in the human genome using a combination of…
Aims to identify all gene features in the human genome using a combination of computational analysis, manual annotation, and experimental validation. Since the first public release of this annotation data set, few new protein-coding loci have been…
GermlncRNA
GermlncRNA
Provides the first comprehensive web-based and open-access lncRNA catalogue for three key…
Provides the first comprehensive web-based and open-access lncRNA catalogue for three key male germ cell stages, including type A spermatogonia, pachytene spermatocytes and round spermatids. This information has been developed by integrating male…
Green Non-Coding Database
Green Non-Coding Database
GREENC
A repository of lncRNAs annotated in 37 plant species and six algae. By using the same…
A repository of lncRNAs annotated in 37 plant species and six algae. By using the same pipeline to annotate lncRNAs we make it possible to compare lncRNA sequences and distribution from different species. By organizing the sequences in a central…
Linc2GO
Linc2GO
A web resource that aims to provide comprehensive functional annotations for human…
A web resource that aims to provide comprehensive functional annotations for human lincRNA. MicroRNA-mRNA and microRNA-lincRNA interaction data were integrated to generate lincRNA functional annotations based on the 'competing endogenous RNA…
lnCeDB
lnCeDB
Provides a database of human lncRNAs (from GENCODE 19 version) that can potentially act…
Provides a database of human lncRNAs (from GENCODE 19 version) that can potentially act as ceRNAs. In lnCeDB one can not only browse for lncRNA-mRNA pairs having common targeting miRNAs, but also compare the expression of the pair in 22 human…
LNCipedia
LNCipedia
A database for human long non-coding RNA (lncRNA) transcripts and genes. In addition to…
A database for human long non-coding RNA (lncRNA) transcripts and genes. In addition to basic transcript information and structure, several statistics are calculated for each entry in the database, such as secondary structure information, protein…
lncPro
lncPro
A web app for predicting the interaction between long noncoding RNAs and proteins. By…
A web app for predicting the interaction between long noncoding RNAs and proteins. By coding RNA and protein sequences into vectors, a matrix multiplication is used to give score to each RNA-protein pair. This score can be the measurement of…
LncReg
LncReg
Provides regulatory information about lncRNAs, such as targets, regulatory mechanisms,…
Provides regulatory information about lncRNAs, such as targets, regulatory mechanisms, and experimental evidences for regulation and key molecules participating in regulation. LncReg is developed by collecting 1081 validated lncRNA-associated…
LncRNA2Function
LncRNA2Function
Facilitates researchers to search the functions of a specific lncRNA or the lncRNAs…
Facilitates researchers to search the functions of a specific lncRNA or the lncRNAs associated with a given functional term, or annotate functionally a set of human lncRNAs of interest. The lncRNA2Function will become an important tool for…
lncRNAMap
lncRNAMap
An integrated and comprehensive database relating to exploration of the putative…
An integrated and comprehensive database relating to exploration of the putative regulatory functions of human lncRNAs with two mechanisms of regulation, by encoding siRNAs and by acting as miRNA decoys. To investigate lncRNAs producing siRNAs that…
lncRNASNP
lncRNASNP
A database providing comprehensive resources of single nucleotide polymorphisms (SNPs) in…
A database providing comprehensive resources of single nucleotide polymorphisms (SNPs) in human/mouse lncRNAs. It contains SNPs in lncRNAs, SNP effects on lncRNA structure and lncRNA:miRNA binding. LncRNASNP also integrates GWAS data and miRNA…
lncRNAtor
lncRNAtor
Aims to be the long non-coding RNA portal encompassing expression profile, interacting…
Aims to be the long non-coding RNA portal encompassing expression profile, interacting (binding) protein, integrated sequence curation, evolutionary scores, and coding potential. Data sets were collected from TCGA, GEO, ENCODE, and modENCODE…
LncRNAWiki
LncRNAWiki
A wiki-based platform that is open-content and publicly editable and aimed at…
A wiki-based platform that is open-content and publicly editable and aimed at community-based curation and collection of information on human lncRNAs. Current related databases are dependent primarily on curation by experts, making it laborious to…
lncRNome
lncRNome
A comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in…
A comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. lncRNome hosts information on over 17,000 long noncoding RNAs in Human. The resource provides information on the types, chromosomal locations,…
long noncoding RNA database
long noncoding RNA database
lncRNAdb
A database providing comprehensive annotations of eukaryotic long non-coding RNAs…
A database providing comprehensive annotations of eukaryotic long non-coding RNAs (lncRNAs). In addition to capturing a great proportion of the recent literature describing functions for individual lncRNAs, lncRNAdb now offers an improved user…
LongTarget
LongTarget
A computational method and program to predict lncRNA DNA-binding motifs and binding…
A computational method and program to predict lncRNA DNA-binding motifs and binding sites. LongTarget is used to analyse multiple antisense lncRNAs, including those that control well-known imprinting clusters.
NONCODE
NONCODE
An interactive database that aims to present the most complete collection and annotation…
An interactive database that aims to present the most complete collection and annotation of non-coding RNAs, especially long non-coding RNAs (lncRNAs). In this update, NONCODE has added six new species, bringing the total to 16 species altogether.…
Noncoding RNA Expression Database
Noncoding RNA Expression Database
NRED
Provides gene expression information for thousands of long ncRNAs in human and mouse. The…
Provides gene expression information for thousands of long ncRNAs in human and mouse. The database contains both microarray and in situ hybridization data, much of which is described here for the first time. NRED also supplies a rich tapestry of…
PhyloNONCODE
PhyloNONCODE
A publicly available repository dedicated to the evolutionarily conservation annotation…
A publicly available repository dedicated to the evolutionarily conservation annotation of lncRNAs. PhyloNONCODE starts to place mammalian lncRNAs in an evolutionary context and represent a rich resource for comparative and functional analyses of…
Plant long non-coding RNA database
Plant long non-coding RNA database
PLncDB
Attempts to provide the following functions related to long non-coding RNAs (lncRNAs):…
Attempts to provide the following functions related to long non-coding RNAs (lncRNAs): (i) Genomic information for a large number of lncRNAs collected from various resources; (ii) an online genome browser for plant lncRNAs based on a platform…
Plant Non-coding RNA Database
Plant Non-coding RNA Database
PNRD
It is the updated version of PMRD. PNRD mainly focuses on plant species. A total of 25739…
It is the updated version of PMRD. PNRD mainly focuses on plant species. A total of 25739 entries of 11 different types of ncRNAs from 150 plant species were collected. Targets of miRNAs were extended to 178138 pairs in 46 species, while the number…
PlncRNADB
PlncRNADB
A searchable database of lncRNA sequences and annotation in plants. PlncRNADB includes…
A searchable database of lncRNA sequences and annotation in plants. PlncRNADB includes about 5100 lncRNAs from A. thaliana, A. lyrata, P. trichocarpa and Z. mays. The sequences were obtained either from the literature or by annotation based on…
PLNlncRbase
PLNlncRbase
Provides detailed information for experimentally identified plant lncRNAs. In the current…
Provides detailed information for experimentally identified plant lncRNAs. In the current version, PLNlncRbase has manually collected data from nearly 200 published literature, covering a total of 1187 plant lncRNAs in 43 plant species. The user can…
The Functional lncRNA Database
The Functional lncRNA Database
A repository of mammalian long non-protein-coding transcripts that have been…
A repository of mammalian long non-protein-coding transcripts that have been experimentally shown to be both non-coding and functional. To search for a specific lncRNA, enter its name and choose the appropriate species. Alternatively, you can browse…
ViRBase
ViRBase
Aims to provide the scientific community with a resource for efficient browsing and…
Aims to provide the scientific community with a resource for efficient browsing and visualization of virus-host ncRNA-associated interactions and interaction networks in viral infection. Users can query, browse and manipulate these virus-host…
zflncRNApedia
zflncRNApedia
A comprehensive resource which houses the annotation of lncRNAs as well as associated…
A comprehensive resource which houses the annotation of lncRNAs as well as associated information including expression levels, promoter epigenetic marks, genomic variants and retroviral insertion mutants. The resource also hosts a genome browser…