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Long non-coding RNA disease association prediction software tools | Non-coding RNA data analysis

Increasing evidences have demonstrated that long noncoding RNAs (lncRNAs) play important roles in many human diseases. Therefore, predicting novel lncRNA-disease associations would contribute to dissect the complex mechanisms of disease…
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IRWRLDA
Algorithm

IRWRLDA Improved Random Walk with Restart for LncRNA-Disease Association prediction

Allows users to foresee novel lncRNA-disease associations. IRLWRLDA integrates…

Allows users to foresee novel lncRNA-disease associations. IRLWRLDA integrates various lncRNA similarity measures, disease semantic similarity, and known lncRNA-disease associations. It incorporates…

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IntNetLncSim
Web

IntNetLncSim

Infers long non-coding RNA (lncRNA) functional similarity (LFS) by modeling the…

Infers long non-coding RNA (lncRNA) functional similarity (LFS) by modeling the information flow in an integrated network that comprises both lncRNA-related transcriptional and post-transcriptional…

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LncDisease
Desktop

LncDisease

A sequence-based bioinformatics method to predict the lncRNA-disease…

A sequence-based bioinformatics method to predict the lncRNA-disease associations based on the crosstalk between lncRNAs and miRNAs. Using LncDisease, we predicted the lncRNAs associated with breast…

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BRWLDA
Algorithm

BRWLDA Bi-Random Walks to predict novel LncRNA-Disease Associations

Predicts lncRNA-disease associations by birandom walks on a directed…

Predicts lncRNA-disease associations by birandom walks on a directed bi-relational network. BRWLDA is a computational model built up with two subnetworks (i) lncRNA-lncRNA functional similarity…

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FMLNCSIM
Web

FMLNCSIM Fuzzy Measure-based LNCRNA functional SIMilarity calculation model

A calculation model based on the assumption that functionally similar long…

A calculation model based on the assumption that functionally similar long noncoding RNAs (lncRNAs) tend to be associated with similar diseases. FMLNCSIM performance improvement comes from the…

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ExInAtor
Desktop

ExInAtor

Aims to address the unique opportunity of comprehensively discovering cancer…

Aims to address the unique opportunity of comprehensively discovering cancer driver lncRNAs within and across tumour types using mutation data generated by projects such as TCGA (The Cancer Genome…

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ncPred
Web
Desktop

ncPred

Uses a tripartite network to guide the inference process of novel ncRNA-disease…

Uses a tripartite network to guide the inference process of novel ncRNA-disease associations. The tripartite network allows the introduction of two levels of interaction: ncRNA-target and…

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LDAP
Web

LDAP LncRNA-Disease Association Prediction

A web server for long noncoding RNA-disease (lncRNA-disease) association…

A web server for long noncoding RNA-disease (lncRNA-disease) association prediction. LDAP predicts potential lncRNA-disease associations by using a bagging SVM classifier based on lncRNA similarity…

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LRLSLDA
Desktop

LRLSLDA Laplacian Regularized Least Squares for LncRNA-Disease Association

A computational model in the semisupervised learning framework. LRLSLDA method…

A computational model in the semisupervised learning framework. LRLSLDA method prioritizes the entire long-non-coding RNAome (lncRNAome) for disease of interest by integrating known phenome-lncRNAome…

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