LncRNA-ID statistics

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Citations per year

Number of citations per year for the bioinformatics software tool LncRNA-ID
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Tool usage distribution map

This map represents all the scientific publications referring to LncRNA-ID per scientific context
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Associated diseases

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Popular tool citations

chevron_left Coding and noncoding region discrimination chevron_right
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LncRNA-ID specifications

Information


Unique identifier OMICS_09805
Name LncRNA-ID
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Yanni Sun

Publication for LncRNA-ID

LncRNA-ID citations

 (2)
library_books

PlantRNA_Sniffer: A SVM Based Workflow to Predict Long Intergenic Non Coding RNAs in Plants

2017
Noncoding RNA
PMCID: 5831995
PMID: 29657283
DOI: 10.3390/ncrna3010011

[…] to ncRNAs, if they have not been recorded in the protein databases. PSoL [], SnoReport [], RNAsnoop [], and SnoStrip [] are methods designed to classify small ncRNAs. LncRScan-SVM [], lncRNA-MFDL [], lncRNA-ID [], lncRNApred [], PLEK [], and CNCI [] are methods that use machine learning techniques in order to classify lncRNAs. In particular, ISeeRNA [] and linc-SF [] use machine learning technique […]

library_books

Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination

2016
Biomed Res Int
PMCID: 5153550
PMID: 28042575
DOI: 10.1155/2016/8496165

[…] ws the longest time to finish the process because of its alignment process. When being tested on a dataset containing 4,000 protein-coding and 4,000 long noncoding transcripts, CPAT takes 35.36 s and LncRNA-ID takes 65.35 s to accomplish the discrimination while PLEK and CPC need 21.47 m and 86.51 h, respectively []. PLEK is 8 times and 244 times faster than CNCI and CPC, respectively, on the same […]


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LncRNA-ID institution(s)
Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, USA
LncRNA-ID funding source(s)
This work is supported by the National Science Foundation [DBI-0953738].

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