LncRNA-ID specifications

Information


Unique identifier OMICS_09805
Name LncRNA-ID
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Yanni Sun

Publication for LncRNA-ID

LncRNA-ID citations

 (2)
library_books

PlantRNA_Sniffer: A SVM Based Workflow to Predict Long Intergenic Non Coding RNAs in Plants

2017
Noncoding RNA
PMCID: 5831995
PMID: 29657283
DOI: 10.3390/ncrna3010011

[…] to ncRNAs, if they have not been recorded in the protein databases. PSoL [], SnoReport [], RNAsnoop [], and SnoStrip [] are methods designed to classify small ncRNAs. LncRScan-SVM [], lncRNA-MFDL [], lncRNA-ID [], lncRNApred [], PLEK [], and CNCI [] are methods that use machine learning techniques in order to classify lncRNAs. In particular, ISeeRNA [] and linc-SF [] use machine learning technique […]

library_books

Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination

2016
Biomed Res Int
PMCID: 5153550
PMID: 28042575
DOI: 10.1155/2016/8496165

[…] es though this figure is not that useful because it can only distinguish 19.00% and 47.20% lncRNAs. CNCI displayed better performance on both datasets, but PLEK even achieved a more satisfying result.LncRNA-ID is another method to identify the long noncoding transcripts. Compared with other programs, LncRNA-ID strikes a good balance between sensitivity and false positive rate. According to , it is […]

LncRNA-ID institution(s)
Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, USA
LncRNA-ID funding source(s)
This work is supported by the National Science Foundation [DBI-0953738].

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