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Long non-coding RNA interaction databases | Non-coding RNA data analysis

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DIANA-LncBase
Dataset

DIANA-LncBase

Hosts transcriptome-wide experimentally verified and computationally predicted…

Hosts transcriptome-wide experimentally verified and computationally predicted miRNA recognition elements (MREs) on human and mouse lncRNAs. The analysis performed includes an integration of most of…

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NPInter
Dataset

NPInter Noncoding RNAs and Protein related biomacromolecules Interaction

Catalogs experimentally determined functional interactions between ncRNAs and…

Catalogs experimentally determined functional interactions between ncRNAs and proteins, mRNAs or genomic DNA sequences. NPInter integrates the diverse body of experimental knowledge about functional…

ChIPBase
Dataset

ChIPBase

Enables to explore the transcriptional regulatory networks of noncoding RNAs…

Enables to explore the transcriptional regulatory networks of noncoding RNAs (ncRNAs) and protein-coding genes (PCGs). ChIPBase is an open database that integrates many ChIPseq peak datasets of…

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lncRInter
Dataset

lncRInter

Provides comprehensive datasets of lncRNA interaction pairs with experimental…

Provides comprehensive datasets of lncRNA interaction pairs with experimental evidences. lncRInter is a specialized resource of lncRNA interaction pairs with experimental evidences in publications.…

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LncRNA2Target
Dataset

LncRNA2Target

A curated database which stores lncRNA-to-target genes. A gene was considered…

A curated database which stores lncRNA-to-target genes. A gene was considered as a target of a lncRNA if it is differentially expressed after the lncRNA knockdown or overexpression. LncRNA2Target…

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starBase
Dataset

starBase

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs,…

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from large-scale CLIP-Seq (HITS-CLIP,…

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Lncin
Web

Lncin lncRNA interaction

Identifies long non-coding RNAs (lncRNAs)-associated modules from protein…

Identifies long non-coding RNAs (lncRNAs)-associated modules from protein interaction networks and predicts the function of lncRNAs based on the protein functions in the modules. Lncin utilizes not…

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LncRNADisease
Dataset

LncRNADisease

A database that collected and curated approximately 480 entries of…

A database that collected and curated approximately 480 entries of experimentally supported lncRNA-disease associations, including 166 diseases. LncRNADisease also curated 478 entries of lncRNA…

GPA
Dataset

GPA Gene Perturbation Atlas

A database that includes a comprehensive collection of transcriptome profiles…

A database that includes a comprehensive collection of transcriptome profiles of protein coding genes, miRNAs and lncRNAs perturbed by knockdown or overexpression in human and mouse. GPA offers a…

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MiRcode
Web

MiRcode

Provides "whole transcriptome" human microRNA target predictions…

Provides "whole transcriptome" human microRNA target predictions based on the comprehensive GENCODE gene annotation, including >10,000 long non-coding RNA genes. Coding genes are also…

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EVLncRNAs
Dataset

EVLncRNAs Experimentally Validated lncRNAs

Provides all species and covers functional and disease-specific roles for all…

Provides all species and covers functional and disease-specific roles for all long non-coding RNAs (lncRNAs) validated. EVLncRNAs contains about 1543 lncRNAs from 77 species along with their…

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