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lncRNA-MFDL specifications


Unique identifier OMICS_07396
Name lncRNA-MFDL
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


  • Primates
    • Homo sapiens


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Publication for lncRNA-MFDL

lncRNA-MFDL citations


decodeRNA— predicting non coding RNA functions using guilt by association

PMCID: 5502368
DOI: 10.1093/database/bax042

[…] (), differential mRNA expression upon lncRNA modulation (lncRNA2Target) () or a combination of lncRNA expression, sequence conservation, coding potential and secondary structure formation (lncRNAtor, lncRNA-MFDL) (,).Here, we present decodeRNA, the successor of miRNA body map. decodeRNA contains inferred functions both for miRNAs and lncRNAs in over 29 cancer and 12 normal tissue types (10 489 sam […]


PlantRNA_Sniffer: A SVM Based Workflow to Predict Long Intergenic Non Coding RNAs in Plants

Noncoding RNA
PMCID: 5831995
PMID: 29657283
DOI: 10.3390/ncrna3010011

[…] fy novel PCTs into ncRNAs, if they have not been recorded in the protein databases. PSoL [], SnoReport [], RNAsnoop [], and SnoStrip [] are methods designed to classify small ncRNAs. LncRScan-SVM [], lncRNA-MFDL [], lncRNA-ID [], lncRNApred [], PLEK [], and CNCI [] are methods that use machine learning techniques in order to classify lncRNAs. In particular, ISeeRNA [] and linc-SF [] use machine le […]


Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination

Biomed Res Int
PMCID: 5153550
PMID: 28042575
DOI: 10.1155/2016/8496165

[…] As to the features, the length and coverage of the longest ORF, one of the classical and typical features, are selected as the criteria. In addition, G + C content, k-mer (k is from 1 to 3 just like lncRNA-MFDL), and length of the sequence are also the features of LncRNApred. The novel idea of LncRNApred is SNR, which transforms one sequence into four binary numeric sequences:(13)ub=1,Sn=b,0,Sn≠b […]


Non coding yet non trivial: a review on the computational genomics of lincRNAs

BioData Min
PMCID: 4687140
PMID: 26697116
DOI: 10.1186/s13040-015-0075-z

[…] l based on a variety of factors mentioned above, in addition to nucleotide composition. It was trained to differentiate protein coding genes and lncRNAs with an area under the curve (AUC) of 0.99 []. LncRNA-MFDL is another tool that uses a deep learning method and the fusion of multiple features to classify lincRNAs with an accuracy of 97.1 % []. […]


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lncRNA-MFDL institution(s)
Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, XI'an, China

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