lncRNA-screen specifications

Unique identifier:
OMICS_14314
Interface:
Command line interface
Input data:
A list of Sequence Read Archive (SRA) accession numbers or The Cancer Genome Atlas (TCGA) UUIDs matched with user-defined sample names.
Output format:
HTML, XLS
Programming languages:
R
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
An interactive lncRNA report.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

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lncRNA-screen distribution

download

lncRNA-screen support

Documentation

Maintainer

  • Aristotelis Tsirigos <>

Additional information

https://github.com/NYU-BFX/lncRNA-screen/blob/master/README.md

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Credits

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Publications

Institution(s)

Department of Pathology, New York University School of Medicine, New York, NY, USA; NYU Cancer Institute and Helen L. and Martin S. Kimmel Center for Stem Cell Biology, New York University School of Medicine, New York, NY, USA; Department of Population Health, New York University School of Medicine, NY, USA; Goldman Sachs Group Inc, New York, NY, USA; Applied Bioinformatics Center, Office of Collaborative Science, New York University School of Medicine, NY, USA

Funding source(s)

The study was supported by a Research Scholar Grant, RSG-15-189-01 - RMC from the American Cancer Society and the research program R01CA194923 and R01CA169784 from National Institute of Health (National Cancer Institute).

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