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LncRNA2Function specifications

Information


Unique identifier OMICS_07595
Name LncRNA2Function
Restrictions to use None
Version 1.0
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for LncRNA2Function

LncRNA2Function citations

 (6)
library_books

Genome wide Association Study of Idiopathic Osteonecrosis of the Femoral Head

2017
Sci Rep
PMCID: 5678103
PMID: 29118346
DOI: 10.1038/s41598-017-14778-y

[…] and FANTOM5. We also checked the data of expression quantitative trait locus (eQTL) for the genes using GTEx. To investigate the function of LINC01370, we performed pathway enrichment analysis using LncRNA2Function and Co-LncRNA, both of which use publicly available RNA-Seq data and evaluate co-expression patterns of protein-coding genes for long non-coding RNAs. About Co-LncRNA, we selected live […]

library_books

decodeRNA— predicting non coding RNA functions using guilt by association

2017
PMCID: 5502368
DOI: 10.1093/database/bax042

[…] miRNA body map (). Similar web tools utilizing enrichment strategies to predict miRNA functions have been published following our original publication (,). To our knowledge, only two other web tools—lncRNA2function (57 samples from 2 studies) and co-LncRNA (29 012 samples from 241 independent datasets)—apply this method for lncRNAs. Both tools follow a hypergeometric test-based approach—limited t […]

library_books

lncRNA screen: an interactive platform for computationally screening long non coding RNAs in large genomics datasets

2017
BMC Genomics
PMCID: 5458484
PMID: 28583068
DOI: 10.1186/s12864-017-3817-0

[…] ucted [, ], however the authors have not made their pipelines available. A number of databases and bioinformatics tools have been developed to annotate and catalog lncRNAs that are known or novel []. LncRNA2Function [], LNCipedia [], lncRNAdb [] and lncRNAtor [] provide comprehensive databases for known, annotated lncRNAs. iSeeRNA [], CPC [] and CPAT [] introduced machine learning-based approaches […]

library_books

Integrating Epigenomics into the Understanding of Biomedical Insight

2016
Bioinform Biol Insights
PMCID: 5138066
PMID: 27980397
DOI: 10.4137/BBI.S38427

[…] , which include HOMER, MEME, cERMIT, GLAM2, MatrixREDUCE, and RNAcontext. Although there are tools for the ncRNA secondary structure prediction and functional annotation, such as GraphProt, CapR, and LncRNA2Function, there are still significant challenges in this field including increasing the sensitivity and specificity, decreasing the false-positive discovery rate, and expanding the algorithms f […]

library_books

LncRNAs are altered in lung squamous cell carcinoma and lung adenocarcinoma

2016
Oncotarget
PMCID: 5421846
PMID: 27903974
DOI: 10.18632/oncotarget.13651

[…] LncRNA2Function is an ontology-driven tool for exploring potential lncRNA functions to guide experimental and clinical investigations []. It is based on expression correlations between lncRNAs and pro […]

library_books

Computational Approaches for the Analysis of ncRNA through Deep Sequencing Techniques

2015
Front Bioeng Biotechnol
PMCID: 4453482
PMID: 26090362
DOI: 10.3389/fbioe.2015.00077

[…] e to verify lack of protein/domain similarity, lack of long ORFs, and high non-coding potential.Finally, an innovative approach in the functional annotation of lncRNAs is provided by Jiang et al. (). LncRNA2Function provides the first ontology-driven user-friendly web system based on the idea that similar expression patterns across multiple conditions may share similar functions and biological pat […]


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LncRNA2Function institution(s)
School of Computer Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China

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