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lncRNAdb specifications


Unique identifier OMICS_02790
Name lncRNAdb
Alternative name long noncoding RNA database
Restrictions to use None
Version 2.0
Maintained Yes


  • person_outline Quek Xiu Cheng

Publications for long noncoding RNA database

lncRNAdb citations


The use of long non coding RNAs as prognostic biomarkers and therapeutic targets in prostate cancer

PMCID: 5945524
PMID: 29755696
DOI: 10.18632/oncotarget.25038

[…] e development of databases that are designed specifically for lncRNAs. There are several databases that are dedicated to the curation of novel reported lncRNAs, including LncRNABase [], LNCipedia [], lncRNAdb [], LncRNAWiki [], NONCODE [], TANRIC [] and the ncRNA expression database []. Sequencing technology has evolved rapidly enough to allow lncRNA profiling at a single-cell resolution [], which […]


Bioinformatic analysis and prediction of the function and regulatory network of long non coding RNAs in hepatocellular carcinoma

PMCID: 5934726
PMID: 29740493
DOI: 10.3892/ol.2018.8271

[…] miRNAs, small nucleolar RNA, small nuclear RNAs, piwi-interacting RNAs, natural antisense transcripts, ribosomal RNAs, transfer RNAs and lncRNAs (). A total of 270 lncRNAs have been documented in the lncRNAdb database (). Several studies have demonstrated that lncRNAs may serve notable functions in cell physiological activities, in the development of various types of tumor and in epigenetics, tran […]


Dissection of Myogenic Differentiation Signatures in Chickens by RNA Seq Analysis

PMCID: 5793186
PMID: 29324704
DOI: 10.3390/genes9010034

[…] ). Transcripts that passed through all of the filters mentioned above were collected as a candidate set of lncRNAs and were then blasted against the chicken lncRNAs retrieved from the Domestic-Animal Long Noncoding RNA Database (ALDB) v1.0 []. […]


Non coding RNAs and Their Roles in Stress Response in Plants

PMCID: 5673675
PMID: 29017967
DOI: 10.1016/j.gpb.2017.01.007

[…] As in 16 species, which covers various types of ncRNAs and evaluates lncRNA coding potential using CNCI software. However, among plant species, there are only Arabidopsis lncRNAs included in NONCODE. lncRNAdb provides comprehensive annotations of 287 eukaryotic lncRNAs, as well as their experimentally-verified biological functions. Therefore, there are only few plant lncRNAs in lncRNAdb, e.g., 7 […]


Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells: Lipopolysaccharide Effects In Vitro

PMCID: 5632992
PMID: 29147069
DOI: 10.1155/2017/3427461

[…] identifying those with a defined functional role in the determination of endothelial responses in vitro or in vivo. To accomplish this, sequences of functionally annotated lncRNAs were acquired from lncRNAdb [] and blasted against the NONCODE database. Subsequent search of such lncRNAs in our datasets enabled us to capture a total of 44 lncRNAs that were either up- or downregulated in LPS-treated […]


ZBTB7A Enhances Osteosarcoma Chemoresistance by Transcriptionally Repressing lncRNALINC00473 IL24 Activity

PMCID: 5609875
PMID: 28942243
DOI: 10.1016/j.neo.2017.08.008
call_split See protocol

[…] (part number G2505C). Approximately 30,586 lncRNAs and 26,109coding transcripts collected from the most authoritative databases, such as RefSeq (release 55), UCSC Human (GRCh37/hg19), GENCODE 13, and lncRNAdb (2.0), were detected using the microarray. Agilent Feature Extraction software (version was used to analyze acquired array images. Quantile normalization and subsequent data process […]


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lncRNAdb institution(s)
Garvan Institute of Medical Research, Sydney, Australia; St Vincent's Clinical School, University of New South Wales, Sydney, Australia

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