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LncRNApred specifications


Unique identifier OMICS_29576
Name LncRNApred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No


This tool is not available anymore.

Publication for LncRNApred

LncRNApred citations


Elucidating the Role of Host Long Non Coding RNA during Viral Infection: Challenges and Paths Forward

PMCID: 5748604
PMID: 29053596
DOI: 10.3390/vaccines5040037

[…] PhyloCSF) []. This can be done alone or in combination with non-conservation-based computational tools, such as a coding potential calculator (CPC) [], coding potential assessment tool (CPAT) [], and LncRNApred [,,]. To further filter out potential protein coding transcripts, tools like HMMER software can be used to sort out transcripts that encode protein domains [,]. The remaining transcripts ar […]


PlantRNA_Sniffer: A SVM Based Workflow to Predict Long Intergenic Non Coding RNAs in Plants

Noncoding RNA
PMCID: 5831995
PMID: 29657283
DOI: 10.3390/ncrna3010011

[…] they have not been recorded in the protein databases. PSoL [], SnoReport [], RNAsnoop [], and SnoStrip [] are methods designed to classify small ncRNAs. LncRScan-SVM [], lncRNA-MFDL [], lncRNA-ID [], lncRNApred [], PLEK [], and CNCI [] are methods that use machine learning techniques in order to classify lncRNAs. In particular, ISeeRNA [] and linc-SF [] use machine learning techniques to classify […]


Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination

Biomed Res Int
PMCID: 5153550
PMID: 28042575
DOI: 10.1155/2016/8496165

[…] u/lncRNA_MDFL/. LncRNApred only has the web interface and is available at http://mm20132014.wicp.net:57203/LncRNApred/home.jsp. However, the link of lncRNA-MFDL expired when we did this research. And LncRNApred only provides a web server which cannot handle too many sequences at one time. […]

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LncRNApred institution(s)
Department of Mathematics, College of Science, Nanjing Agricultural University, Nanjing, China
LncRNApred funding source(s)
Supported by the National Natural Science Foundation of China (11571173, 11401311, 31301229) and the Natural Science Foundation of Jiangsu Province (BK20141358).

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