lncRNAtor statistics

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Associated diseases

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lncRNAtor specifications

Information


Unique identifier OMICS_04192
Name lncRNAtor
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Plants and Fungi
    • Saccharomyces cerevisiae
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Publication for lncRNAtor

lncRNAtor in publications

 (13)
PMCID: 5893854
PMID: 29670884
DOI: 10.3389/fmolb.2018.00027

[…] the binding tendency of protein with rnas (livi et al., ). a similar study by park et al. has also attempted to explore the possible functions of lncrnas by focusing at the rbp-lncrna interactions. lncrnator functionally annotates lncrna molecules based on their expression profiles and co-expression with mrnas. it also encompass lncrna's interaction data with 57 rbps for 5 organisms (park et […]

PMCID: 5776855
PMID: 29336373
DOI: 10.4103/0366-6999.222337

[…] mirna and mrna, mirna and lncrna, mirna and circular rna, mirna and competing endogenous rna, and rna and protein. this database integrates the data from popular target prediction platforms.[], lncrnator collects data from tcga, geo, encode, and modencode and compiles lncrna expression profiles for cancer samples, as well as provides protein-coding gene coexpression analysis and gene […]

PMCID: 5502368
DOI: 10.1093/database/bax042

[…] (), differential mrna expression upon lncrna modulation (lncrna2target) () or a combination of lncrna expression, sequence conservation, coding potential and secondary structure formation (lncrnator, lncrna-mfdl) (,)., here, we present decoderna, the successor of mirna body map. decoderna contains inferred functions both for mirnas and lncrnas in over 29 cancer and 12 normal tissue […]

PMCID: 5438651
PMID: 28423699
DOI: 10.18632/oncotarget.16044

[…] the expression of p21 and p57 via associating with prc2. these data support a role for lucat1 in regulating both the nsclc cell cycle and proliferation., first, we used the bioinformatics tools “lncrnator” (http://lncrnator.ewha.ac.kr/index.htm) to analyze rna-seq data from tcga (the cancer genome atlas) of lncrnas of lung squamous cell carcinoma (n = 391) and lung adenocarcinoma (n = 291). […]

PMCID: 5458248
PMID: 28423669
DOI: 10.18632/oncotarget.15991

[…] method. rna levels of the nuclear and the cytoplasmic fractions were analyzed by rt-pcr and were normalized to levels of external rna., lncrna data were downloaded for lgg and gbm cases from the lncrnator online tool, using the differential expression browser (http://lncrnator.ewha.ac.kr/expression.htm, 20 april, 2016). clinical data were taken from the pan-glioma analysis from tcga (; […]


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lncRNAtor institution(s)
Ewha Research Center for Systems Biology (ERCSB), Department of Life Science, Ewha Womans University, Seoul, Korea; Ewha Research Center for Systems Biology (ERCSB), Department of Life Science, Ewha Womans University, Seoul, Korea; Ewha Research Center for Systems Biology (ERCSB), Department of Life Science, Ewha Womans University, Seoul, Korea; Ewha Research Center for Systems Biology (ERCSB), Department of Life Science, Ewha Womans University, Seoul, Korea; Ewha Research Center for Systems Biology (ERCSB), Department of Life Science, Ewha Womans University, Seoul, Korea

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