lncScore specifications

Information


Unique identifier OMICS_13563
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Transcripts sequences
Input format BED, FASTA
Output data Table with transcript identifier, coding scores
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.0.0
Stability Stable
Requirements Perl, SciKit-learn, pysam
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Jian Zhao <>

lncScore article

lncScore institution(s)
Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing, China; Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA; Division of Bioinformatics, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA; Institute for Genomic Medicine, Columbia University Medical Center, New York, NY, USA; Department of Biomedical Informatics, Columbia University Medical Center, New York, NY, USA
lncScore funding source(s)
The study was supported by grants from National Natural Science Foundation of China (No. 61571223, No. 61171191), Specialized Research Fund for the Doctoral Program of Higher Education (No. 20133218110016), the “Six Talent Peak” Project of Jiangsu Province under Grant No. SWYY-021, and NIH grant HG006465.

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