LncTar pipeline

LncTar specifications

Information


Unique identifier OMICS_09348
Name LncTar
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Output data Paired RNAs
Output format TXT
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_09348
Name LncTar
Interface Web user interface
Restrictions to use None
Input data A LncRNA or RNA sequence
Input format FASTA
Output data Paired RNAs
Output format TXT
Computer skills Basic
Stability Stable
Maintained Yes

Publication for LncTar

LncTar IN pipelines

 (2)
2016
PMCID: 5308646
PMID: 27542205
DOI: 10.18632/oncotarget.11304

[…] of the entire module and reflect the core functions of the module [57]. we used visant to visualize the gene connections (based on topological overlap) among the intramodular hub genes [58]., lnctar, a reliable bioinformatics tool, was used to analyze the interaction between hub lncrnas and hub coding genes in each module [59]. the variation on the standard “sliding” algorithm approach […]

2016
PMCID: 5308646
PMID: 27542205
DOI: 10.18632/oncotarget.11304

[…] binding free energy (ndg) and identify the minimum free energy joint structure. the ndg was regard as a cutoff (ndg ≤ −0.1) to determine the paired rnas as either interacting or not. the accuracy of lnctar is over 80% confirmed by the biological experiments [59]., to compare human and mouse lncrna modules, we mapped human genes to the orthologous mouse gene annotations from the mouse genome […]

LncTar institution(s)
Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China; School of Computer Science, Hebei University of Technology, Tianjin, China
LncTar funding source(s)
This study was supported by National Nature Science Foundation of China (Nos. 91339106, 81422006) and the 863 project (2014AA021102).

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