lobSTR specifications
Information
| Unique identifier | OMICS_00109 |
|---|---|
| Name | lobSTR |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | One or more sequencing libraries. |
| Input format | FASTA,FASTQ,BAM |
| Output data | The alignment of STR reads and the most likely alleles for each STR locus. |
| Output format | BAM+TSV |
| Operating system | Unix/Linux |
| Programming languages | C, C++ |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Version | 4.0.6 |
| Stability | Stable |
| Maintained | Yes |
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Documentation
Maintainer
- person_outline Yaniv Erlich <>
Additional information
http://lobstr.teamerlich.org/documentation.html
Publication for lobSTR
2012 Genome Res
PMCID: 3371701
PMID: 22522390
DOI: 10.1101/gr.135780.111
lobSTR institution(s)
Harvard–MIT Division of Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, USA; Whitehead Institute for Biomedical Research, Cambridge, MA, USA; Department of Statistics and Operations Research, Tel Aviv University, Tel Aviv, Israel
lobSTR funding source(s)
Supported by the National Defense Science & Engineering Graduate Fellowship, a fellowship from the Edmond Safra Center for Bioinformatics at Tel-Aviv University, Israeli Science Foundation grant ISF 1227/09 and an IBM Open Collaborative Research grant.
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