lobSTR specifications

Information


Unique identifier OMICS_00109
Name lobSTR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data One or more sequencing libraries.
Input format FASTA,FASTQ,BAM
Output data The alignment of STR reads and the most likely alleles for each STR locus.
Output format BAM+TSV
Operating system Unix/Linux
Programming languages C, C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 4.0.6
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Yaniv Erlich <>

Additional information


http://lobstr.teamerlich.org/documentation.html

Publication for lobSTR

lobSTR institution(s)
Harvard–MIT Division of Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, USA; Whitehead Institute for Biomedical Research, Cambridge, MA, USA; Department of Statistics and Operations Research, Tel Aviv University, Tel Aviv, Israel
lobSTR funding source(s)
Supported by the National Defense Science & Engineering Graduate Fellowship, a fellowship from the Edmond Safra Center for Bioinformatics at Tel-Aviv University, Israeli Science Foundation grant ISF 1227/09 and an IBM Open Collaborative Research grant.

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