LocalAli specifications

Information


Unique identifier OMICS_06337
Name LocalAli
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Publication for LocalAli

LocalAli citation

library_books

Unified Alignment of Protein Protein Interaction Networks

2017
Sci Rep
PMCID: 5430463
PMID: 28424527
DOI: 10.1038/s41598-017-01085-9

[…] r, local aligners focus on the most conserved regions of the networks, and thus return very small alignments. Although local aligners are not designed to align large networks (AlignNemo, AlignMCL and LocalAli all encounter memory issues on our datasets), we were able to use AlignNemo to align our smallest pair of networks, R. norvegicus PPI network (1,657 nodes and 2,330 edges) and S. pombe PPI ne […]

LocalAli institution(s)
Department of Mathematics and Computer Science, Freie Universit├Ąt Berlin, Berlin, Germany

LocalAli review

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Anonymous user #1188

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Desktop
Cool! A multiple local network alignment tool.