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LocalMotif specifications

Information


Unique identifier OMICS_06293
Name LocalMotif
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data The discovered motifs with their intervals of localization, the three individual scores (RES, ORS and SCS), and the combined (weighted) scores.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for LocalMotif

LocalMotif in publication

PMCID: 5687335
PMID: 28524769
DOI: 10.1080/15592294.2017.1329068

[…] each base position such that a certain combination of those sequences matches with every sub-sequence. some motifs are also found to be unique to dna methylation sites. discovery tools like oligo, localmotif,, prospector, and glam2, among other pattern discovery algorithms, have been used to find novel motifs, which are the best predictors of new dmr sites. these motifs are usually constructed […]


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LocalMotif institution(s)
Department of Computer Science, National University of Singapore, Singapore; Department of Computer Science and Engineering, College of Engineering Roorkee, Uttarakhand, India
LocalMotif funding source(s)
Supported by Academic Research Fund (AcRF) R-252-000-326-112.

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