LocARNA specifications

Unique identifier:
OMICS_03736
Interface:
Command line interface, Web user interface
Input data:
Set of RNA sequences
Output data:
Multiple alignment of the input sequences
License:
GNU General Public License version 3.0
Version:
1.8.12
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Programming languages:
C++
Computer skills:
Basic
Stability:
Stable

Subtools

  • SPARSE
  • ExpaRNA-P
  • LocARNA-P

LocARNA specifications

Unique identifier:
OMICS_03736
Interface:
Command line interface
Input data:
Set of RNA sequences
Output data:
Multiple alignment of the input sequences
Programming languages:
C++
Computer skills:
Advanced
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Version:
1.8.12
Maintained:
Yes

Subtools

  • SPARSE
  • ExpaRNA-P
  • LocARNA-P

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LocARNA distribution

download

LocARNA support

Documentation

Maintainer

  • Rolf Backofen <>
  • Rolf Backofen <>

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Credits

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Publications

Institution(s)

Chair for Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universität, Freiburg, Germany; CSAIL and Mathematics Department, Computation and Biology Group, MIT, Cambridge, MA, USA; Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark; Department of Theoretical Chemistry, University of Vienna, Vienna, Austria; Bioinformatics Group, Department of Computer Science, Interdisciplinary Center of Bioinformatics, University of Leipzig, Leipzig, Germany; Max-Planck-Institute for Mathematics in the Sciences, Leipzig, Germany; Fraunhofer Institute for Cell Therapy and Immunology, Leipzig, Germany; Santa Fe Institute, Santa Fe, NM, USA; Center for Biological Signaling Studies (BIOSS), University of Freiburg, Freiburg, Germany;

Funding source(s)

This work was supported by the German Research Foundation (grants BA 2168/3-1 as well as BA 2168/2-2, STA 850/7-1 [under the auspices of SPP-1258 ‘‘Sensory and Regulatory RNAs in Prokaryotes’’], the Excellence Initiative of the German Federal and State Governments [EXC 294], and WI 3628/1-1); ESF grant no. 14494 (administered by the Sächsische AufbauBank); the German Federal Ministry of Education and Research (BMBF grant 0313921 FRISYS); and the Austrian Gen-AU project ‘‘Regulatory ncRNAs.’’

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