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Unique identifier OMICS_10741
Name LocateP
Restrictions to use None
Maintained No

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Publication for LocateP

LocateP citations

 (19)
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Proteomic and bioinformatic pipeline to screen the ligands of S. pneumoniae interacting with human brain microvascular endothelial cells

2018
Sci Rep
PMCID: 5869694
PMID: 29588455
DOI: 10.1038/s41598-018-23485-1
call_split See protocol

[…] localization, the second, ontology analysis and finally the prediction of protein interactions (Fig.¬†). Primary predictions of subcellular localization were assigned by using the web-based algorithm LocateP (http://www.cmbi.ru.nl/locatep-db/cgi-bin/locatepdb.py) and Psortb (http://www.psort.org/psortb/). These algorithms group the protein candidates in more general categories (e.g. cytoplasmic, m […]

call_split

A Two Component Regulatory System Impacts Extracellular Membrane Derived Vesicle Production in Group A Streptococcus

2016
MBio
PMCID: 5090034
PMID: 27803183
DOI: 10.1128/mBio.00207-16
call_split See protocol

[…] and further processed for nano-LC-MS/MS using the Q Exactive Orbitrap mass spectrometer (Thermo Fisher). Raw data were analyzed using MaxQuant, with protein localization and function predicted using LocateP and DAVID. […]

call_split

Membrane Vesicles of Group B Streptococcus Disrupt Feto Maternal Barrier Leading to Preterm Birth

2016
PLoS Pathog
PMCID: 5008812
PMID: 27583406
DOI: 10.1371/journal.ppat.1005816
call_split See protocol

[…] 50 ppm error for band No. 4). A match with S. agalactiae protein with the best score in each Mascot search was accepted as successful identification (p< 0.05). Subcellular locations were predicted by LocateP database and confirmed by pSORT and TMHMM algorithms. […]

library_books

Isolation and identification of Enterococcus faecalis membrane proteins using membrane shaving, 1D SDS/PAGE, and mass spectrometry

2016
FEBS Open Bio
PMCID: 4887974
PMID: 27419061
DOI: 10.1002/2211-5463.12075

[…] The proteins identified from both 1D SDS/PAGE and membrane shaving isolation techniques were searched using the Locate P database (http://www.cmbi.ru.nl/locatep-db/cgi-bin/locatepdb.py) to determine the predicted localization. The total number of membrane‚Äźassociated proteins and intracellular proteins were determined for each membrane enrichment proto […]

library_books

Comparison of Surface Proteomes of Adherence Variants of Listeria Monocytogenes Using LC MS/MS for Identification of Potential Surface Adhesins

2016
PMCID: 4931391
PMID: 27196934
DOI: 10.3390/pathogens5020040

[…] on MS/MS analysis alone were grouped to satisfy the principles of parsimony. The observed protein false discovery rate (FDR) rate was one percent. Additional tools for proteomic analysis (ListiList, LocateP, PSORT, Cell Wall Predictor, Lipoprotein Predictor, Transmembrane Prediction, SignalP Identification, Hydropathy, and GRAVY values) were used as described previously []. […]

library_books

Proteomic Profiling of Bifidobacterium bifidum S17 Cultivated Under In Vitro Conditions

2016
Front Microbiol
PMCID: 4751264
PMID: 26903976
DOI: 10.3389/fmicb.2016.00097

[…] ted in the cell wall or extracellular were further analyzed for transmembrane helices and signal peptides by SignalP v4.1 and TMHMM Server v2.0 and searched or LPxTG cell wall anchor motifs using the LocateP database to confirm their cellular localization (Table ). Interestingly, these analysis suggest a different localization for several of these proteins as predicted by PSORTB. For example, thre […]

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LocateP institution(s)
Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, HB Nijmegen, Netherlands

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