LOCSVMPSI statistics

Tool stats & trends

Looking to identify usage trends or leading experts?


LOCSVMPSI specifications


Unique identifier OMICS_26871
Interface Web user interface
Restrictions to use None
Input format FASTA
Programming languages C, PHP, Python
Computer skills Basic
Version 1.3
Maintained No


This tool is not available anymore.

Publication for LOCSVMPSI

LOCSVMPSI citations


An Ensemble Classifier for Eukaryotic Protein Subcellular Location Prediction Using Gene Ontology Categories and Amino Acid Hydrophobicity

PLoS One
PMCID: 3268814
PMID: 22303481
DOI: 10.1371/journal.pone.0031057

[…] In order to check the performance of our method, we made comparisons with the following methods: iLoc-Euk , Euk-mPLoc 2.0 , Hum-mPLoc 2.0 , LOCSVMPSI , Complexity-based method , and the method proposed by Park and Kanehisa which are also based on the Euk7579 dataset. We also compared our method with the KNN binary classifiers, LIBSVM bin […]


The Trypanosoma brucei MitoCarta and its regulation and splicing pattern during development

Nucleic Acids Res
PMCID: 2995047
PMID: 20660476
DOI: 10.1093/nar/gkq618

[…] g. TargetP (), iPSORT (), PredSL ()] and Pfam domain occurrences [e.g. MITOPRED (,), MitPred ()]. They employ different computational techniques, such as support vector machine [SVM; e.g. ELSpred (), LOCSVMPSI (), MitPred (), PLOC (), SubLoc ()], artificial neural network [ANN; e.g. Predotar (), PredSL (), TargetP ()], hidden Markov model [HMM; e.g. MitPred (), PredSL ()], k-nearest neighbor [k-NN […]


Semi supervised protein subcellular localization

BMC Bioinformatics
PMCID: 2648770
PMID: 19208149
DOI: 10.1186/1471-2105-10-S1-S47

[…] in bioinformatics and is shown to perform relatively better compared to many others. There are also a large number of specialized databases are exploited such as DBSubLoc [], ESLPred [], HSLpred [], LOCSVMPSI [], LOC3d [], PSORTb [], PSORT [], LOCtree [], BaCelLo [], TargetP [], SecretomeP [], PredictNLS [], WoLF PSORT [], Proteome Analyst [], and CELLO [].In this paper, we present a novel approa […]


Pollination in Nicotiana alata stimulates synthesis and transfer to the stigmatic surface of NaStEP, a vacuolar Kunitz proteinase inhibitor homologue

J Exp Bot
PMCID: 2504342
PMID: 18689443
DOI: 10.1093/jxb/ern175
call_split See protocol

[…] predictions using neural networks () and hidden Markov models () trained on eukaryotes. Protein subcellular localization was predicted with PA-SUB (; www.cs.ualberta.ca/∼bioinfo/PA/Sub/) or with the LOCSVMPSI 1.3 server (; http://bioinformatics.ustc.edu.cn). […]


Meta prediction of protein subcellular localization with reduced voting

Nucleic Acids Res
PMCID: 1976432
PMID: 17670799
DOI: 10.1093/nar/gkm562
call_split See protocol

[…] predictor for the meta-prediction problem, a prediction program needs to be accessible online or be available in downloadable form. Several predicting programs, including NNPSL, FUZZY_LOC, LOCnet and LOCSVMPSI, were excluded from consideration, because the implementations of these prediction programs are no longer available. Since a vast majority of the remaining prediction programs take full-leng […]


Looking to check out a full list of citations?

LOCSVMPSI institution(s)
Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, China; Department of Biomedical Engineering, City University of New York, NY, USA


star_border star_border star_border star_border star_border
star star star star star

Be the first to review LOCSVMPSI