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LOCSVMPSI specifications

Information


Unique identifier OMICS_26871
Name LOCSVMPSI
Interface Web user interface
Restrictions to use None
Input format FASTA
Programming languages C, PHP, Python
Computer skills Basic
Version 1.3
Maintained No

Maintainer


This tool is not available anymore.

Publication for LOCSVMPSI

LOCSVMPSI citations

 (5)
library_books

An Ensemble Classifier for Eukaryotic Protein Subcellular Location Prediction Using Gene Ontology Categories and Amino Acid Hydrophobicity

2012
PLoS One
PMCID: 3268814
PMID: 22303481
DOI: 10.1371/journal.pone.0031057

[…] In order to check the performance of our method, we made comparisons with the following methods: iLoc-Euk , Euk-mPLoc 2.0 , Hum-mPLoc 2.0 , LOCSVMPSI , Complexity-based method , and the method proposed by Park and Kanehisa which are also based on the Euk7579 dataset. We also compared our method with the KNN binary classifiers, LIBSVM bin […]

library_books

The Trypanosoma brucei MitoCarta and its regulation and splicing pattern during development

2010
Nucleic Acids Res
PMCID: 2995047
PMID: 20660476
DOI: 10.1093/nar/gkq618

[…] g. TargetP (), iPSORT (), PredSL ()] and Pfam domain occurrences [e.g. MITOPRED (,), MitPred ()]. They employ different computational techniques, such as support vector machine [SVM; e.g. ELSpred (), LOCSVMPSI (), MitPred (), PLOC (), SubLoc ()], artificial neural network [ANN; e.g. Predotar (), PredSL (), TargetP ()], hidden Markov model [HMM; e.g. MitPred (), PredSL ()], k-nearest neighbor [k-NN […]

library_books

Semi supervised protein subcellular localization

2009
BMC Bioinformatics
PMCID: 2648770
PMID: 19208149
DOI: 10.1186/1471-2105-10-S1-S47

[…] in bioinformatics and is shown to perform relatively better compared to many others. There are also a large number of specialized databases are exploited such as DBSubLoc [], ESLPred [], HSLpred [], LOCSVMPSI [], LOC3d [], PSORTb [], PSORT [], LOCtree [], BaCelLo [], TargetP [], SecretomeP [], PredictNLS [], WoLF PSORT [], Proteome Analyst [], and CELLO [].In this paper, we present a novel approa […]

call_split

Pollination in Nicotiana alata stimulates synthesis and transfer to the stigmatic surface of NaStEP, a vacuolar Kunitz proteinase inhibitor homologue

2008
J Exp Bot
PMCID: 2504342
PMID: 18689443
DOI: 10.1093/jxb/ern175
call_split See protocol

[…] predictions using neural networks () and hidden Markov models () trained on eukaryotes. Protein subcellular localization was predicted with PA-SUB (; www.cs.ualberta.ca/∼bioinfo/PA/Sub/) or with the LOCSVMPSI 1.3 server (; http://bioinformatics.ustc.edu.cn). […]

call_split

Meta prediction of protein subcellular localization with reduced voting

2007
Nucleic Acids Res
PMCID: 1976432
PMID: 17670799
DOI: 10.1093/nar/gkm562
call_split See protocol

[…] predictor for the meta-prediction problem, a prediction program needs to be accessible online or be available in downloadable form. Several predicting programs, including NNPSL, FUZZY_LOC, LOCnet and LOCSVMPSI, were excluded from consideration, because the implementations of these prediction programs are no longer available. Since a vast majority of the remaining prediction programs take full-leng […]

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LOCSVMPSI institution(s)
Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, China; Department of Biomedical Engineering, City University of New York, NY, USA

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