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LocusTrack specifications

Information


Unique identifier OMICS_07861
Name LocusTrack
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Gabriel Cuellar-Partida <>

Publication for LocusTrack

LocusTrack in publications

 (3)
PMCID: 5611747
PMID: 28892072
DOI: 10.1038/tp.2017.183

[…] and considered false discovery rate (fdr) adjusted p-values below 0.05 as statistically significant. to visualize the gene regions showing significant associations in our discovery analyses, we used locustrack and haploview for defining ld blocks based on the ‘solid spine of ld’ option., univariate linear mixed model (lmm) implemented in gemma (genome-wide efficient mixed-model association) […]

PMCID: 5253632
PMID: 28098162
DOI: 10.1038/ncomms13624

[…] that could compromise research participant privacy/consent., https://github.com/bulik/ldsc , http://enigma.usc.edu/protocols/genetics-protocols/ , http://gump.qimr.edu.au/general/gabriec/locustrack/ , http://enigma.ini.usc.edu/download-enigma-gwas-results/ , http://www.internationalgenome.org/data , how to cite this article: hibar, d. p. et al. novel genetic loci associated […]

PMCID: 4608754
PMID: 26474483
DOI: 10.1371/journal.pgen.1005593

[…] 1p22.2 did not reveal any known genes, with the closest, znf326, being ~325kb upstream (). this led us to perform a detailed annotation survey of the region surrounding the peak on chr 1p22.2 using locustrack []. locustrack allows the incorporation of association statistics, snp ld information, as well as several relevant ucsc annotation tracks, namely: evofold (bioinformatic prediction of rna […]

LocusTrack institution(s)
Statistical Genetics, QIMR Berghofer Medical Research Institute, Brisbane, Australia

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