LogOddsLogo statistics

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Associated diseases

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LogOddsLogo specifications


Unique identifier OMICS_05888
Name LogOddsLogo
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for LogOddsLogo


Log-odds sequence logos.

2015 Bioinformatics
PMCID: 4318935
PMID: 25294922
DOI: 10.1093/bioinformatics/btu634

LogOddsLogo in publications

PMCID: 4618392
PMID: 26490019
DOI: 10.1038/ncomms9733

[…] and using previously determined position frequency matrices downloaded from scertf. fasta sequences were uploaded to the meme-chip web server for de novo motif discovery. logos were generated with logoddslogo, using the yeast gc content option., a custom perl script with a shell wrapper (average_plot_ends.pl and window_ends.sh in ) was used to determine average fragment end counts […]

PMCID: 4362643
PMID: 25887984
DOI: 10.1186/s12862-015-0327-z

[…] of gene ages between gene sets of interest, such as those occupied by different polymerase forms or in different functional classes., sequence logos for clades were created using the online tool logoddslogo []. in generation of the summary logos for clades, all heptad repeats from the specified species were input into the generator., to determine promoter rpb1 occupancy genome-wide, we used […]

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LogOddsLogo institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA; Center for Human Genetics Research and Department of Biomedical Informatics, Vanderbilt University, Nashville, TN, USA

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