LongTarget statistics

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LongTarget specifications


Unique identifier OMICS_06105
Name LongTarget
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for LongTarget

LongTarget in publications

PMCID: 5833400
PMID: 29445134
DOI: 10.1038/s41419-018-0275-9

[…] was used to predict the rnabinding protein that could bind to foxd2-as1. the website is http://pridb.gdcb.iastate.edu/rpiseq/rpintdb.html. the foxd2-as1 dna-binding domain was identified with longtarget, built by zhu h from southern medical university. the website is http://lncrna.smu.edu.cn/show/dnatriplex. the e2f1 binding sites of the foxd2-as1 promoter were predicted using the jaspar […]

PMCID: 5509713
PMID: 28706206
DOI: 10.1038/s41598-017-02561-y

[…] szcześniak and collaborators predicted a large number of lncrna-rna interactions in human transcriptome using a similarity-search method. as an alternative, he et al. developed a tool named longtarget to predict lncrna-dna interactions via base-pairing analysis. in our present study, we initially investigated the content of lncrnas and the pattern of expression in the transcriptomes […]

PMCID: 5502368
DOI: 10.1093/database/bax042

[…] lncrna functionality. other, non-enrichment-based approaches to characterize lncrna functionality include e.g. transcription factor binding (tf2lncrna) (), lncrna/protein and lncrna/dna binding (longtarget) (), differential mrna expression upon lncrna modulation (lncrna2target) () or a combination of lncrna expression, sequence conservation, coding potential and secondary structure formation […]

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LongTarget institution(s)
Bioinformatics Section, School of Basic Medical Sciences and Network Center, Southern Medical University, Guangzhou, China

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