loopy pipeline

loopy specifications


Unique identifier OMICS_26610
Name loopy
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Registration required Yes
Maintained Yes


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  • person_outline Barry Honig <>
  • person_outline Jackal Team <>

Publication for loopy

loopy IN pipeline

PMCID: 3136923
PMID: 21779343
DOI: 10.1371/journal.pone.0021871

[…] structural overlap due to the sequence dissimilarity with t. thermophilus if1, but a better overlap was obtained manually. the manually oriented insert was then connected to the rest of if2mt using loopy [44] for prediction of linker region structures. the complete model was then optimized using a series of restrained minimization and dynamics steps performed with charmm [45]. if the 49 aa […]

loopy institution(s)
Howard Hughes Medical Institute, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA
loopy funding source(s)
Supported by National Institutes of Health Grant GM-30518.

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