LorDG specifications

Information


Unique identifier OMICS_14029
Name Lorentzian 3D Genome
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A Hi-C contact file
Output data A PDB file with the model, a txt file with setting used to build the model, a txt file with setting and average correlation of Spearman’s and a txt file with the mapping of genomic positions to indices in the models
Output format PDB, TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Jianlin Cheng <>

LorDG article

LorDG institution(s)
Computer Science Department, University of Missouri-Columbia, MO, USA; Informatics Institute, University of Missouri-Columbia, MO, USA
LorDG funding source(s)
This work was supported by the National Science Foundation (DBI1149224).

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