Lotus japonicus genome assembly statistics

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Lotus japonicus genome assembly specifications

Information


Unique identifier OMICS_11995
Name Lotus japonicus genome assembly
Interface Web user interface
Restrictions to use None
Biological technology Illumina
Computer skills Basic
Version 3.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Satoshi Tabata <>

Publication for Lotus japonicus genome assembly

Lotus japonicus genome assembly in publications

 (3)
PMCID: 4783406
PMID: 27014306
DOI: 10.3389/fpls.2016.00282

[…] using the full-length protein sequences of all four arabidopsis thaliana aux/laxs (ataux1 and atlax1-3) as queries. following the same approach, putative ljlax members were found from the lotus japonicus genome assembly build 2.5 (http://www.kazusa.or.jp/lotus/)., full-length protein sequences of aux/laxs from soybean, common bean, medicago truncatula, lotus japonicus, arabidopsis, […]

PMCID: 4647520
PMID: 26572792
DOI: 10.1186/s12864-015-2149-1

[…] genome at phytozome (v9.1) [] using a. thaliana pin protein sequences as queries. following this approach, putative pin members were identified from the medicago truncatula genome (v4) [], and the lotus japonicus genome assembly build 2.5 []. protein sequences were downloaded for all identified putative pins. see additional file : table s2 for accession numbers of all sequences used […]

PMCID: 4091089
PMID: 24270631
DOI: 10.4161/psb.25975

[…] activities of nin and nlps from l. japonicus in the current study., to identify all nlp genes in the genome of l. japonicus, we performed a blast search of a genomic database for l. japonicus (lotus japonicus genome assembly build 2.5; http://www.kazusa.or.jp/lotus/). in addition to 2 nlp genes, ljnlp1 and ljnlp2, 2 transcripts encoding an nlp (chr3.cm0091.230.r2.m […]


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Lotus japonicus genome assembly institution(s)
Kazusa DNA Research Institute, Kisarazu, Chiba, Japan; Graduate School of Human Development and Environment, Kobe University, Kobe, Japan; Department of Biotechnology, Graduate School of Engineering, Osaka University, Osaka, Japan; Institute of Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan; Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama, Ikoma, Nara, Japan

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