lpNet specifications

Information


Unique identifier OMICS_16074
Name lpNet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 2.12.0
Stability Stable
Requirements
nem, lpSolve
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Lars Kaderali

Publication for lpNet

lpNet citation

library_books

Reconstruction of the temporal signaling network in Salmonella infected human cells

2015
Front Microbiol
PMCID: 4507143
PMID: 26257716
DOI: 10.3389/fmicb.2015.00730

[…] urbation and time-series assays. However, based on the optimization function and the linear constraints, LP-based methods may be computationally expensive, as well. For example, a very recent method, lpNet (Matos et al., ), requires 3 days to reconstruct a 20 node network in the in silico dataset of the HPN-DREAM breast cancer network inference challenge. The DREAM (Dialogue on Reverse-Engineering […]

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