LpRGNI specifications

Information


Unique identifier OMICS_13548
Name LpRGNI
Alternative name Lp Regularization for Gene Network Inference
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data log2-transformed gene expression fold changes between control and TF perturbation samples
Input format TXT
Output data Solution matrix of the L0/L1 regularization model obtained from the iterative hard thresholding algorithm.
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Source code URL http://jjwanglab.org:8080/hkubioinfo/LpRGNI/LpRGNI.zip
Maintained Yes

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Publication for Lp Regularization for Gene Network Inference

LpRGNI institution(s)
Department of Biochemistry, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China; Shenzhen Institute of Research & Innovation, The University of Hong Kong, Shenzhen, China; Department of Mathematics, Zhejiang University, Hangzhou, China; Department of Applied Mathematics, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong Special Administrative Region, China; Centre for Genomic Sciences, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China
LpRGNI funding source(s)
This work was supported by funding from the Research Grants Council, Hong Kong SAR, China (Grant number 781511M), National Natural Science Foundation of China, China (Grant numbers 91229105 and 11101186).

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