0 user reviews
0 user reviews
Already have an account? Sign in to review this tool.
No review has been posted.
No open topic.
- Software type:
- Restrictions to use:
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Command line interface
- Biological technology:
- Programming languages:
(Fan et al., 2016) Computationally expanding Infinium HumanMethylation450 BeadChip array data to reveal distinct DNA methylation patterns of rheumatoid arthritis. Bioinformatics.
- Documentation: http://wanglab.ucsd.edu/star/LR450K/Model_manual.pdf
- Wei Wang <wei-wang at ucsd.edu>
School of Automation Engineering, University of Electronic Science and Technology of China, Chengdu, China; Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA, USA; Department of Medicine, University of California San Diego School of Medicine, La Jolla, CA, USA
This project was supported by the National Natural Science Foundation of China under No. 61503061 (SCF) and grants from the Rheumatology Research Foundation, the Arthritis Foundation, and the National Institutes of Arthritis, Musculoskeletal and Skin Diseases (RO1065066).
Link to literature
Review of tools
Related DNA methylation array analysis tools
Deconvolutes of DNA methylation array data into source contributions from…
Deconvolutes of DNA methylation array data into source contributions from distinct cell types. methylSpectrum is a method for inferring changes in the distribution of white blood cells between…
Guides scientists the whole way through EWAS data analysis. DiMmer offers…
Guides scientists the whole way through EWAS data analysis. DiMmer offers parallelized statistical methods for identifying DMRs in both Illumina 450K and 850K EPIC chip data and also methylated…
A native python module for analysis of 450k methylation platform. PyMAP can be…
A native python module for analysis of 450k methylation platform. PyMAP can be easily deployed to cloud platforms that support python scripting language for large-scale methylation studies. By…
Analyzes methylation intensity data generated from tiling arrays to locate DMRs…
Analyzes methylation intensity data generated from tiling arrays to locate DMRs across a large set of samples simultaneously. ICDMR provides a way to calculate the concordance between adjacent…
A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which…
A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which is featured as multiple core parallel computing.