LRE Analyzer statistics

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LRE Analyzer specifications

Information


Unique identifier OMICS_02365
Name LRE Analyzer
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 0.9.10
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Robert Rutledge <>

Publication for LRE Analyzer

LRE Analyzer in publications

 (6)
PMCID: 5624583
PMID: 28968421
DOI: 10.1371/journal.pone.0185015

[…] candidate and reference genes. primer sequences of the five other candidate genes examined in this study are listed in . automated lre analysis was conducted using the latest version of the lre analyzer (ver. 9.10) available on the lre website (sites.google.com/site/lreqpcr/home). note that detailed descriptions of how lre qpcr was developed, its performance capabilities, […]

PMCID: 5518647
PMID: 28775728
DOI: 10.3389/fpls.2017.01261

[…] were performed in triplicate. the normalization and absolute quantification of the expression levels of each of the six genes were performed using the linear regression efficiency (lre) method using lre analyzer software (rutledge and stewart, ; rutledge, )., extractions and subsequent metabolite analyses were performed from three out of the six available biological repeats that represented […]

PMCID: 4454686
PMID: 26039876
DOI: 10.1371/journal.pone.0128679

[…] reaction by melt curve analysis (65 to 90°c) conducted at the end of each run, which produced a single prominent amplicon peak for all primer pairs. raw fluorescence readings were imported into the lre analyzer program (ver 0.9.7) [], from which absolute quantities of each target (number of transcripts per 10 ng rna) were determined using linear regression of efficiency (lre) and optical […]

PMCID: 5129434
PMID: 27920994
DOI: 10.1016/j.bdq.2014.08.002

[…] the unknown template and an amplicon standard. deconvolution has been released in 2010, uses raw fluorescence values (before baseline subtraction) and outputs quantification results in text format., lre analyzer is a java-based, standalone, platform independent desktop application offering automated analysis and data storage capabilities. it presents a state-of-the art graphical interface […]

PMCID: 3765131
PMID: 23937238
DOI: 10.1186/1471-2229-13-116

[…] and 65°c for 120 s. amplicon tm was determined for each amplification reaction by melt curve analysis (65 to 90°c) conducted at the end of each run. raw fluorescence readings were imported into the lre analyzer (version 0.8.7), an open source java program available for download [,]. the program contains an extensive help dataset that describes how the program functions, along with various […]


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LRE Analyzer institution(s)
Natural Resources Canada, Canadian Forest Service, QC, Canada
LRE Analyzer funding source(s)
Supported in part by a grant to RGR from the Canadian Biotechnology Strategy.

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